Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G22
         (497 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   4.7  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   4.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   8.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.1  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 252 INKFLCTAHTFACSRFIV 199
           I++F   AH FAC R IV
Sbjct: 287 ISQFQLDAHEFACLRAIV 304


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 380 HVRTQWASVHFHMPMCNLR 436
           H+RT      F  P+CN R
Sbjct: 365 HLRTHTGEKRFACPICNKR 383


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 368 FNSNHVRTQWASVHFHMPMCNLREQVKF*CQHR 466
           F++NH  T+   +     +C    Q+K   Q+R
Sbjct: 242 FHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 274


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 368 FNSNHVRTQWASVHFHMPMCNLREQVKF*CQHR 466
           F++NH  T+   +     +C    Q+K   Q+R
Sbjct: 24  FHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 56


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 314 TYKNIESHNIAIRNI 270
           ++KNIESH  AI  I
Sbjct: 41  SFKNIESHLNAISQI 55


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 380 HVRTQWASVHFHMPMCNLR 436
           HVRT      F  P+C+ R
Sbjct: 40  HVRTHSGEKPFRCPVCDRR 58


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 380 HVRTQWASVHFHMPMCNLR 436
           HVRT      F  P+C+ R
Sbjct: 296 HVRTHSGEKPFRCPVCDRR 314


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 252 INKFLCTAHTFACSR 208
           I++F   AH FAC R
Sbjct: 287 ISQFQLDAHEFACLR 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,943
Number of Sequences: 336
Number of extensions: 2514
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)