Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G22
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   0.90 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   3.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   4.8  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   6.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.3  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 91  KKRVLKMSVVS-YINPVRIYRDVFWTPL 171
           +K + +M  +S +  PVR+YRD FWT +
Sbjct: 373 RKTLRRMREMSRFTCPVRVYRDGFWTSI 400


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 369 KMCRSHVRNVRHICMIKNHV*KYRKPQYSNKKYNQNS 259
           K+ +SHV N  H+   K+H  +    Q  N K+ Q++
Sbjct: 472 KLLKSHVMNKLHMAHPKSHTNRSLLRQLKNTKFFQST 508


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 365 IFNSNHVRTQWASVHFHMPMCNLREQV 445
           +FN  H R    +   H   CNLR+ V
Sbjct: 79  LFNKRHFRCDCGTTRTHSIPCNLRKSV 105


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 316 VFYHTYMPNVTHVRSTHF 369
           +FYH   PNVT  +  HF
Sbjct: 137 LFYHNLPPNVTRSQRIHF 154


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 316  VFYHTYMPNVTHVRSTHFQFKPCEDTMGI-CSFPYAYVQLTRTSQILM 456
            + +HT +   T++        PC +T+ +   F  A   L +TS++L+
Sbjct: 4119 IVFHTVLSGRTYIEGAETVMGPCMNTIPVRIKFEGALQTLKKTSRMLI 4166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,784
Number of Sequences: 5004
Number of extensions: 39129
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)