Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G22
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z81074-3|CAB03039.2|  352|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 261 CFDYISYCYIVAFYIFIRGFLSYIYA*RYARAIDTFSIQTM*GHNGHLFISICLCATYEN 440
           C+  I  C ++  Y F      +         + T S+Q + G    LF++I L A +EN
Sbjct: 75  CYVDILICSLITPYFFFPTISGFPVGLLRVLKVPT-SVQVLIGFISALFMAISLVALFEN 133

Query: 441 KSNS 452
           +S++
Sbjct: 134 RSSA 137


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 261 CFDYISYCYIVAFYIFIRGFLSYIYA*RYARAIDTFSIQTM*GHNGHLFISICLCATYEN 440
           C+  I  C ++  Y F      +         + T S+Q + G    LF++I L A +EN
Sbjct: 39  CYVDILICSLITPYFFFPTISGFPVGLLRVLKVPT-SVQVLIGFISALFMAISLVALFEN 97

Query: 441 KSNS 452
           +S++
Sbjct: 98  RSSA 101


>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 378 FELKMCRSHVRNVRHICMIKNHV*KYRKPQYSNKKYNQNSGFI 250
           F+   CRSH    R+I  +K+ V K+ K +   K     SGF+
Sbjct: 37  FQKLTCRSHQDASRNIKFVKSSVGKFFKKKIIQKFSTGGSGFL 79


>Z81074-3|CAB03039.2|  352|Caenorhabditis elegans Hypothetical
           protein F32B6.3 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 71  NCDNDIQRNVYLKCRLLVI 127
           NC+NDI+ ++   CRLLVI
Sbjct: 248 NCNNDIRHHLAKICRLLVI 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,904,611
Number of Sequences: 27780
Number of extensions: 222985
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)