Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G21
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    26   3.4  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.0  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   7.9  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 300 LSNFGNIGNCSYESANF*G 356
           L NFGNIGN S  + N+ G
Sbjct: 118 LRNFGNIGNSSLYTENYSG 136


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 307 ILGTLVIAVTSLPISEDKFFIDYSDGVIGEFGEHFEGDMVLT 432
           ++  L+   T++P  + + F  YSD   G   + FEG+   T
Sbjct: 407 VMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERART 448


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 248  RKTVRLMLHCAQ-LVLCAF*ITASHRYILNDQRDI 147
            RK+ ++   CA  L+L A+    S   +LND RD+
Sbjct: 1641 RKSYKMNSSCADILLLAAYKWNVSRPSLLNDNRDV 1675


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 129  LDYFINVCLRNEVFSVSPLELSAKDPAVLSSGHQHVCLISAS 4
            +D    +CLR     +SPL LS  D  +  +    V ++  S
Sbjct: 1204 IDNMSRICLRETSLFISPLMLSTLDMIIAENNVNEVSVLFKS 1245


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 337 SLPISEDKFFIDYSDGVIGEFGEHFEGDMV--LTSKQKQG 450
           ++P + D F     DGV   F  HF  D    LT K K G
Sbjct: 192 NIPFAVDAFAYGAIDGVEAYFLSHFHSDHYGGLTPKWKHG 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,114
Number of Sequences: 5004
Number of extensions: 41456
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)