Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G21
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical... 28 3.1
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 27 7.1
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 27 7.1
Z49067-1|CAA88849.2| 376|Caenorhabditis elegans Hypothetical pr... 27 9.4
U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical pr... 27 9.4
U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical pr... 27 9.4
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 27 9.4
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical ... 27 9.4
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 27 9.4
>AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical
protein F16G10.14 protein.
Length = 346
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 370 DYSDGVIGE-FGEHFEGDMVLTSKQKQGI 453
D +DG++ + FG E +M++TSK QGI
Sbjct: 293 DLNDGIVNDYFGLLCENNMLMTSKYPQGI 321
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 301 LVILGTLVIAVTSLPISEDKFFIDYSDGVIGEFGEH---FEGDMVLTSKQ 441
+ IL L + +P ++ +D+ D + + E FEGDMVLT +Q
Sbjct: 45 MTILNKLQADILGIPQPDEFSALDFEDKIESKPDEIPYLFEGDMVLTDEQ 94
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 301 LVILGTLVIAVTSLPISEDKFFIDYSDGVIGEFGEH---FEGDMVLTSKQ 441
+ IL L + +P ++ +D+ D + + E FEGDMVLT +Q
Sbjct: 45 MTILNKLQADILGIPQPDEFSALDFEDKIESKPDEIPYLFEGDMVLTDEQ 94
>Z49067-1|CAA88849.2| 376|Caenorhabditis elegans Hypothetical
protein C44F1.2 protein.
Length = 376
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 150 IPLIVKYIPVACGYLKG 200
+PL +PV CGY+KG
Sbjct: 69 VPLNATTVPVTCGYVKG 85
>U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical
protein M03D4.4b protein.
Length = 456
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 482 SPFRASIAAVMPCFCLEVNTISPSKCSPNSPM-TPSE 375
SP + S ++ CLE +++SPS S SP T SE
Sbjct: 347 SPQKTSPLQLLESSCLEQSSVSPSSSSGASPQPTASE 383
>U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical
protein M03D4.4a protein.
Length = 505
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 482 SPFRASIAAVMPCFCLEVNTISPSKCSPNSPM-TPSE 375
SP + S ++ CLE +++SPS S SP T SE
Sbjct: 396 SPQKTSPLQLLESSCLEQSSVSPSSSSGASPQPTASE 432
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 240 GFPHTVTKKCTTNIEYL*NALSNFGNIGN 326
GFP T+T+ C T I N L + ++ N
Sbjct: 164 GFPQTLTRVCLTGIYLTENLLDHLASLKN 192
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 240 GFPHTVTKKCTTNIEYL*NALSNFGNIGN 326
GFP T+T+ C T I N L + ++ N
Sbjct: 112 GFPQTLTRVCLTGIYLTENLLDHLASLKN 140
>AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical
protein T22B2.6 protein.
Length = 145
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = -1
Query: 455 VMPCFCLEVNTISP-----SKCSPNSPMTP 381
V+PC CL TI+ SKC PNS M P
Sbjct: 103 VVPCKCLIKITITQGDKVISKCGPNSCMCP 132
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 26.6 bits (56), Expect = 9.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 229 INLTVFLTQLLRSVQRTLNIYKMLLVILGTLVIAVTSL----PISEDKFFIDYSDGVIGE 396
+N + Q L+++ T M+ V + +V +T + P+ + I + G+IG+
Sbjct: 778 LNSYTGIIQGLKAIPDTTAARNMINVFVEPIVQLITRISSMEPVPPSEALIATTAGIIGD 837
Query: 397 FGEHFEGDMV 426
+ +EGD++
Sbjct: 838 LVQLYEGDII 847
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,346,203
Number of Sequences: 27780
Number of extensions: 228702
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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