Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G20
         (129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    23   5.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    23   5.6  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 72  VRTTWYDKRKKKENLETSSLSP 7
           V +T++    KK+N+E  +L P
Sbjct: 797 VPSTFFSSNTKKDNIEEENLEP 818


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 19  TSLEIFFFFSFIVPSCSY 72
           ++L ++ +FS +VP C Y
Sbjct: 630 SALLLYLYFSLMVPLCKY 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,345
Number of Sequences: 5004
Number of extensions: 5396
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)