Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G20
         (129 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0422 + 17422080-17422217,17422886-17423067,17423145-174233...    25   8.5  

>09_04_0422 +
           17422080-17422217,17422886-17423067,17423145-17423331,
           17423602-17423769,17423915-17424217,17424312-17424497
          Length = 387

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 93  NTVSVANVRTTWYDKRKKKENLETSSLSPSC 1
           N   +ANV     +K   + NLET  + P+C
Sbjct: 344 NLEKLANVGEILLNKPVSRANLETGQMMPAC 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,407
Number of Sequences: 37544
Number of extensions: 26687
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)