Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G20
         (129 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    25   7.4  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    25   9.8  

>U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical
          protein ZC196.8 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 10 RERTSLEIFFFFSFIVPSCSY 72
          +E T  ++F+FFS+++  C Y
Sbjct: 35 KEVTQSQLFYFFSYLIDFCHY 55


>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 10  RERTSLEIFFFFSFIVPSCSY 72
           +E T  E+F+F S+++  C Y
Sbjct: 139 KEVTQSELFYFVSYLIDFCHY 159


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 83  LLLMYEQLGTIKEKKKKISRL 21
           + LM E+LG I E+  KIS+L
Sbjct: 103 IFLMLEELGIIGERVTKISKL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,366
Number of Sequences: 27780
Number of extensions: 28627
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)