Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G19
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 1e-47
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 145 2e-35
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 66 2e-11
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1) 64 9e-11
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28) 31 0.44
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16) 31 0.58
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 31 0.58
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_32940| Best HMM Match : EGF (HMM E-Value=0) 29 3.1
SB_13905| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-17) 29 3.1
SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06) 28 4.1
SB_58186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25) 28 4.1
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 28 5.4
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31) 27 7.1
SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_39823| Best HMM Match : HECT (HMM E-Value=4.5) 27 9.4
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 27 9.4
SB_20861| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 27 9.4
SB_17711| Best HMM Match : HECT (HMM E-Value=4.9) 27 9.4
SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 27 9.4
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 27 9.4
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08) 27 9.4
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 186 bits (453), Expect = 1e-47
Identities = 85/149 (57%), Positives = 111/149 (74%)
Frame = +2
Query: 74 LSNGAKIPVIGIGTWKSKPGEVTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEG 253
L+NG ++PV+G+GTWKSKPG+V AVK AI GYRHIDCA+ Y NEKEVG+A++ ++
Sbjct: 6 LNNGLEMPVLGLGTWKSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKEVGDALR-ELLGS 64
Query: 254 VVKREDLFITSKLWNTFHRPDLVRGALEVSLRNLNIDYLDLYLIHWPQAYKEDDAIFPTD 433
VV+R+DLFITSKLWNT H P VR SL++L +DYLDLYLIHWP ++++ D FP D
Sbjct: 65 VVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSFRDGDEFFPKD 124
Query: 434 ADGKIQFSDVDYVDTWKALEPLVCHGLVR 520
G + ++ D DTWKA+E LV GLV+
Sbjct: 125 EQGNVLYAYHDPCDTWKAMEKLVDEGLVK 153
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 145 bits (351), Expect = 2e-35
Identities = 69/136 (50%), Positives = 94/136 (69%)
Frame = +2
Query: 113 TWKSKPGEVTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEGVVKREDLFITSKL 292
TW+S EV AV+ AI++GYRHIDCA +YGNE E+GEA+ + EG VKRE+LF+TSKL
Sbjct: 59 TWQSSKEEVGNAVRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKL 118
Query: 293 WNTFHRPDLVRGALEVSLRNLNIDYLDLYLIHWPQAYKEDDAIFPTDADGKIQFSDVDYV 472
W H PD V A + +L+NL +DYLDLYLIH P A+K+ + + A+G I ++
Sbjct: 119 WCDSHHPDDVLPACQATLKNLQLDYLDLYLIHIPVAFKKGVRLPHSIAEGIIGYTPEGVQ 178
Query: 473 DTWKALEPLVCHGLVR 520
+TW+A+E LV GL +
Sbjct: 179 NTWQAMEGLVAKGLCK 194
Score = 54.8 bits (126), Expect = 4e-08
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +2
Query: 113 TWKSKPGEVTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEGVVKREDLFITSKL 292
TW S G+V AV+ A ++GYR IDCA ++GNE GEA+ + +G VKRE+ T
Sbjct: 6 TWHSYKGKVGNAVRLAAELGYRLIDCAEIHGNE---GEALSGVLTKGKVKREECGST--- 59
Query: 293 WNTFHRP--DLVRGALEVSLRNLNIDYLDLY 379
W + + VR A+E+ R +ID ++Y
Sbjct: 60 WQSSKEEVGNAVRLAIELGYR--HIDCAEIY 88
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 69.3 bits (162), Expect = 2e-12
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Frame = +2
Query: 74 LSNGAKIPVIGIGTWKSKPGEVT-QAVKDAIDIGYRHIDCAFVYG-NEKEVGEAIKTKIQ 247
L++G +PV+G GT + GE T VK A++ GYR ID A Y +E +V +AI
Sbjct: 331 LASGYTMPVMGFGT--ATLGEDTLSVVKTALETGYRLIDTAQGYPLSEPQVAKAIA---- 384
Query: 248 EGVVKREDLFITSKLWNTFHRPDLVRGALEVSLRNLNIDYLDLYLIHWPQAYKEDDAIFP 427
+ + R+D+FI +KL + + ++E+SLR L+ DY+DL+LIH K D
Sbjct: 385 DSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIH----SKTCDDFLL 440
Query: 428 TDADGKIQFSDVDYVDTWKALEPLVCHGLVR 520
T A+G+ + + + ++WKA+E L G +R
Sbjct: 441 TCAEGEPRGT---WKESWKAMEELHRQGKIR 468
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/107 (36%), Positives = 61/107 (57%)
Frame = +2
Query: 74 LSNGAKIPVIGIGTWKSKPGEVTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEG 253
+++G KIP++G+G QAV A++ GYR ID A Y NE+ VGEA++
Sbjct: 70 MNDGRKIPLLGLGAHDIHS---KQAVLWALESGYRLIDTASRYHNEQSVGEAVRCSN--- 123
Query: 254 VVKREDLFITSKLWNTFHRPDLVRGALEVSLRNLNIDYLDLYLIHWP 394
+ R ++++ +K++ T H A SL L + Y+DLYLIH+P
Sbjct: 124 -IPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFP 169
>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
Length = 93
Score = 63.7 bits (148), Expect = 9e-11
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = +2
Query: 71 TLSNGAKIPVIGIGTWKSKPGEVTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQE 250
TLS+G KIP G+G + QAV A++ GYR ID A Y NEK VGEA++ E
Sbjct: 2 TLSDGYKIPRFGLGLYDLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGEALR----E 57
Query: 251 GVVKREDLFITSKLWNTFHRPDLVRGALEVSLRNL 355
V R ++++ +K+++T H + A + SL L
Sbjct: 58 SAVPRSEVYLVTKVYHTDHGYEKTMKAYDRSLSAL 92
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +2
Query: 158 AIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEGVVKREDLFITSKLWNTFHRPDLVRGALE 337
A+ GYR +D A +Y NEKEVG A++ + +KRED+++T+KL + +
Sbjct: 53 ALKNGYRMLDTADIYQNEKEVGSAVR----KSGLKREDIYVTTKLKPSEEGHSNALKYAK 108
Query: 338 VSLRNLNIDYLDLYLIHWPQ 397
S++ L+I Y+DL+LIH P+
Sbjct: 109 ESIKKLDIGYVDLFLIHTPR 128
>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 32.7 bits (71), Expect = 0.19
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +2
Query: 137 VTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEGVVKREDLFITSKLWNTFHRPD 316
V + + + I Y + C V+G + I+T +++G + LF+ + W D
Sbjct: 260 VPEKITNIIRKSYEEMTCRVVHGRQLTDAFEIRTGVRQGCLLSPFLFLLAIDWIMKTSTD 319
Query: 317 LVRGALEVSL-RNL-NIDYLDLYLIHWPQAYKEDDAIFPTDADGKI 448
R ++ +L + L ++D+ DL L+ Q ++ D K+
Sbjct: 320 QKRNGIQWTLWKQLDDLDFADLALLFHTQQQMQEKTNIVADNSAKL 365
>SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)
Length = 329
Score = 31.5 bits (68), Expect = 0.44
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 250 LLNLSLYSLTHFLLVSIDKCAVYVSISDVYGIL 152
+L + Y++T +++ I KCA++ S VYG++
Sbjct: 167 VLGMDTYNVTFCVVMGICKCAIFTSYIQVYGVI 199
>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
Length = 195
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 335 EVSLRNLNIDYLDLYLIHW 391
E SL L ID +DLYL+HW
Sbjct: 49 EKSLERLGIDRIDLYLLHW 67
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -1
Query: 452 TGSYRPHPLGRSHRLLCKPGASGSDRD 372
TG YRP P+G+ RL GASG+ RD
Sbjct: 123 TGPYRPDPIGKCDRLQ-SDGASGNIRD 148
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 271 IFPFNDTLLNLSLYSLTHFLLVSIDKCAVYVSISDVYGILNSLRNFSWFRL 119
+ P L ++L+ LT+ L S + VS + I+ L FSW+RL
Sbjct: 731 LLPQPHDFLAITLFQLTYQLAGSTENQTEIVSPNATEIIIKDLERFSWYRL 781
>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
Length = 1025
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = -1
Query: 509 RGTREALEPSTCPRNPHPRTGSYRPHPLGRSHRLLCKPGASGSDRDRD 366
RG R + P C NP G LG R C PG +GSD D D
Sbjct: 80 RGDRCEVRPGQCITNPCVN-GICELDSLGNP-RCFCIPGFAGSDIDED 125
>SB_13905| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-17)
Length = 321
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 110 GTWKSKPGEVTQAVKDAIDIGYRHIDCA 193
G+W + P +VT ++ +D+G RH+ CA
Sbjct: 209 GSWCASPSDVTPFLQ--VDLGTRHVICA 234
>SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)
Length = 623
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 350 NLNIDYLDLYLIHWPQAYKEDDAIFPTDADGKIQFSDVDYVDTWKALEPLV 502
NL +D+L LI + KE +A G++ D WKA+EP V
Sbjct: 376 NLPLDHLQQKLIQETEKLKEIAPHLTQEAAGQVPVVAGRPKDVWKAMEPEV 426
>SB_58186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 484 LPRVHVIHIRELDLTVRIRWEDRI 413
+ +V H R L +RIRW+DRI
Sbjct: 532 IKKVEQFHTRSLRAIMRIRWQDRI 555
>SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)
Length = 1034
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 185 DCAFVYGNEKEVGEAIKTKIQEGVVKREDLFIT 283
DC F G+ KE K+ + E ++K DLF T
Sbjct: 317 DCKFRLGSSKETSTPQKSDLLEALLKNLDLFRT 349
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 371 DLYLIHWPQAYKEDDAIFPTDAD 439
D+ +HWP +E D + TD+D
Sbjct: 1826 DMMTVHWPACLEERDGLSKTDSD 1848
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 485 PSTCPRNPHPRTGSYRPHPLGRSHRLLCKPG 393
P ++P R Y PHPLG+ LC G
Sbjct: 81 PKALVQSPEARYMLYFPHPLGKCDSSLCGTG 111
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -2
Query: 484 LPRVHVIHIRELDLTVRIRWEDRIVFFVSLGPVDQXXXXXXXXXXXERYF 335
L ++ H R L +RIRW+DRI L D R++
Sbjct: 735 LKKLERFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWY 784
>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
Length = 414
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +2
Query: 215 EVGEAIKTKIQEGVV-----KREDLFITSKLWNTFHRPDLVRGALEVSL 346
E+GE I +G++ K D + K+WN F PD A ++L
Sbjct: 87 ELGEDALNSISQGMLPNTIRKEPDRVVMRKIWNLFEHPDTSMLARAIAL 135
>SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 293 WNTFHRPDLVRGALEVSLRNLNIDYLDLYLIHWPQAYK-EDDA--IFPTDADGKIQFSDV 463
W +R L N+ I+ L++ L + P +K DD+ + P A+G+ + V
Sbjct: 477 WKCVNRGTTQGSVSSPYLFNIFINDLEINLCNQPALFKYADDSNIVIPVWANGECRTDLV 536
Query: 464 DYVDTWKALEPLVCH 508
D TW +VC+
Sbjct: 537 DLFLTWTKDNGMVCN 551
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 470 RNPHPRTGSYRPHPLGRSHRLLCKPGASGSDR-DRDSQY*GS*AILRGRHGRGQ 312
R+ + R SYR HR LC P G R D D + + R H + Q
Sbjct: 140 RSQYQRLHSYRGSRTSSRHRELCLPSKGGESRPDHDKSHPTNGGESRPDHDKSQ 193
>SB_39823| Best HMM Match : HECT (HMM E-Value=4.5)
Length = 289
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 LRNLNIDYLDLYLIHWPQAYK-EDDA--IFPTDADGKIQFSDVDYVDTWKALEPLVCH 508
L N+ I+ L++ L + P +K DD+ + P A+G+ + VD TW +VC+
Sbjct: 69 LFNIFINDLEINLCNQPALFKYADDSNIVIPVWANGECRTDLVDLFLTWTKDNGMVCN 126
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 LRNLNIDYLDLYLIHWPQAYK-EDDA--IFPTDADGKIQFSDVDYVDTWKALEPLVCH 508
L N+ I+ L++ L + P +K DD+ + P A+G+ + VD TW +VC+
Sbjct: 1220 LFNIFINDLEINLCNQPALFKYADDSNIVIPVWANGECRTDLVDLFLTWTKDNGMVCN 1277
>SB_20861| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 370
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 LRNLNIDYLDLYLIHWPQAYK-EDDA--IFPTDADGKIQFSDVDYVDTWKALEPLVCH 508
L N+ I+ L++ L + P +K DD+ + P A+G+ + VD TW +VC+
Sbjct: 124 LFNIFINDLEINLCNQPALFKYADDSNIVIPVWANGECRTDLVDLFLTWTKDNGMVCN 181
>SB_17711| Best HMM Match : HECT (HMM E-Value=4.9)
Length = 310
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 LRNLNIDYLDLYLIHWPQAYK-EDDA--IFPTDADGKIQFSDVDYVDTWKALEPLVCH 508
L N+ I+ L++ L + P +K DD+ + P A+G+ + VD TW +VC+
Sbjct: 64 LFNIFINDLEINLCNQPALFKYADDSNIVIPVWANGECRTDLVDLFLTWTKDNGMVCN 121
>SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 290 LWNTFHRPDLVRGALEVSLRNLNIDYLDLYLIH 388
+WN + +P VR +LEV L+NL +++ L+H
Sbjct: 172 IWNGYKQPS-VR-SLEVPLKNLPVEFHGTTLVH 202
>SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 639
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 257 VKREDLFITSK-LWNTFHRPDLVRGALEVSLRNLNIDYLDLYLIHWPQA 400
V +DLF+ L N RPDL + + +D DL+L+ PQA
Sbjct: 39 VDSKDLFLLQMPLANESWRPDLSKIKFPEIPKKTPVDAKDLFLLRMPQA 87
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 440 RPHPLGRSHRLLCKPGASGSDRDRDSQY 357
RP P G +HR C+PG S D+++
Sbjct: 427 RPSPGGGAHRSACRPGISPESFYGDNKF 454
>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 401
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 484 LPRVHVIHIRELDLTVRIRWEDRI 413
+ ++ H R L +RIRW+DRI
Sbjct: 232 IKKLEQFHTRSLRAIMRIRWQDRI 255
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +2
Query: 137 VTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEGVVKREDLFITSKLWNTFHRPD 316
V++ + + I Y + C V+G + I+T +++G + LF+ + W D
Sbjct: 726 VSEKITNIIRKSYEGMTCRVVHGRQLTDAFEIRTGVRQGCLLSPFLFLLAIDWIMKTSTD 785
Query: 317 LVRGALEVSL-RNL-NIDYLD--LYLIHWPQAYKE 409
R ++ +L + L ++D+ D L H Q +E
Sbjct: 786 QKRNGIQWTLWKQLDDLDFADDLALLSHTQQQMQE 820
>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
Length = 421
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +2
Query: 137 VTQAVKDAIDIGYRHIDCAFVYGNEKEVGEAIKTKIQEGVVKREDLFITSKLWNTFHRPD 316
V++ + + I Y + C V+G + I+T +++G + LF+ + W D
Sbjct: 82 VSEKITNIIRKSYEGMTCRVVHGRQLTDAFEIRTGVRQGCLLSPFLFLLAIDWIMKTSTD 141
Query: 317 LVRGALEVSL-RNL-NIDYLD--LYLIHWPQAYKE 409
R ++ +L + L ++D+ D L H Q +E
Sbjct: 142 QKRNGIQWTLWKQLDDLDFADDLALLSHTQQQMQE 176
>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 LRNLNIDYLDLYLIHWPQAYK-EDDA--IFPTDADGKIQFSDVDYVDTWKALEPLVCH 508
L N+ I+ L++ L + P +K DD+ + P A+G+ + VD TW +VC+
Sbjct: 382 LFNIFINDLEINLCNQPALFKYADDSNIVIPVWANGECRTDLVDLFLTWTKDNGMVCN 439
>SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 500 REALEPSTCPRNPHPRTGSYRPHPLGRSHRLLCKPGASGSDRD 372
RE ++ C H + + + + SH C PG SG+ R+
Sbjct: 516 RECIDIDECVTGDHTCDKNAKCNNIVGSHHCTCNPGFSGNGRE 558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,916
Number of Sequences: 59808
Number of extensions: 327452
Number of successful extensions: 1062
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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