Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G19
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 2.5
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 23 2.5
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 3.3
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 3.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 4.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 4.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 4.4
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 5.8
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 5.8
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 5.8
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 5.8
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 7.7
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 7.7
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 128 PGEVTQAVKDAIDIGYRHIDCAFVYGNEK 214
PG+++ +D HI C F EK
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFAEIKEK 378
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 22.6 bits (46), Expect = 2.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 128 PGEVTQAVKDAIDIGYRHIDCAFVYGNEK 214
PG+++ +D HI C F EK
Sbjct: 61 PGQISNGYTPVLDCHTAHIACKFAEIKEK 89
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.2 bits (45), Expect = 3.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 214 LLVSIDKCA-VYVSISDVYGILNSLRNFSWFRLPSAYSNYGNFCTV 80
L+ S+D + + SDV+ +S SW RL S + + + C V
Sbjct: 59 LVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVHGCKV 104
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 128 PGEVTQAVKDAIDIGYRHIDCAFVYGNEK 214
PG+++ +D HI C F EK
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFADIKEK 378
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 4.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 433 IRWEDRIVFFVSLGP 389
++W ++V+F SL P
Sbjct: 228 VKWTGKVVYFTSLFP 242
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 4.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 433 IRWEDRIVFFVSLGP 389
++W ++V+F SL P
Sbjct: 281 VKWTGKVVYFTSLFP 295
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 4.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 273 KSSLLTTPS*ILVFIASPTSFSFP*TNAQSMCLYPMSMASLTACVTSP 130
KSS +T S I S S P N + P+SM++L + V SP
Sbjct: 357 KSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSP 404
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.4 bits (43), Expect = 5.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 271 IFPFNDTLLNLSLYSLTH 218
IFPF+D L + ++ S+++
Sbjct: 192 IFPFDDPLCSFAIESISY 209
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.4 bits (43), Expect = 5.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 271 IFPFNDTLLNLSLYSLTH 218
IFPF+D L + ++ S+++
Sbjct: 192 IFPFDDPLCSFAIESISY 209
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 5.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 271 IFPFNDTLLNLSLYSLTH 218
IFPF+D L + ++ S+++
Sbjct: 243 IFPFDDPLCSFAIESISY 260
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 5.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 271 IFPFNDTLLNLSLYSLTH 218
IFPF+D L + ++ S+++
Sbjct: 192 IFPFDDPLCSFAIESISY 209
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.0 bits (42), Expect = 7.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 443 YRPHPLGRSHRLLCKPG 393
YRPHP + CK G
Sbjct: 109 YRPHPHNLVGKEACKQG 125
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.0 bits (42), Expect = 7.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 443 YRPHPLGRSHRLLCKPG 393
YRPHP + CK G
Sbjct: 109 YRPHPHNLVGKEACKQG 125
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,954
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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