Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G17
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 143 9e-35
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 92 3e-19
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 87 1e-17
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 72 3e-13
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 69 2e-12
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 68 4e-12
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 67 7e-12
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 29 2.3
Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical pr... 29 3.1
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 3.1
AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical... 28 5.3
Z81537-1|CAB04372.1| 326|Caenorhabditis elegans Hypothetical pr... 27 9.3
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 27 9.3
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 27 9.3
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 9.3
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 9.3
AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical... 27 9.3
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 27 9.3
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 143 bits (346), Expect = 9e-35
Identities = 63/116 (54%), Positives = 90/116 (77%)
Frame = +1
Query: 73 MARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRL 252
M+R SSAGFDRHITIFSPEGR+YQVEYA KAIN LT+VA++ +DAAV+A Q+ VPD L
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL 60
Query: 253 LDPSSVTHLFSLTERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIPVHILCR 420
+ +VT ++ +++ +GC GMI D++ Q++RA+ EAA+W+YK G ++P +L +
Sbjct: 61 IVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAK 116
Score = 66.5 bits (155), Expect = 1e-11
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 440 SQVYTQNAEMRPLGCSMMLIAYDEESGPSVYKTDPSGYY 556
+Q YTQNAEMR LGC+++ I+YD+E GP VY+ DP+GYY
Sbjct: 122 NQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYY 160
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 91.9 bits (218), Expect = 3e-19
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Frame = +1
Query: 97 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTH 276
+D TIFSPEGRLYQVEYA++AI+ G T + + SS+ VVAA+R +LLD S +T
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAISHAG-TCLGILSSEGIVVAAERKNVHKLLDDSVMTE 63
Query: 277 -LFSLTERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIPVHIL 414
++ L++ I C + G+ AD+ + R+ AA+++ YG E+PV L
Sbjct: 64 KVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQL 110
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 443 QVYTQNAEMRPLGCSMMLIAYDEESGPSVYKTDPSGYY 556
Q YTQ RP G S++ I +D+ G +Y++DPSG Y
Sbjct: 119 QRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNY 156
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/103 (37%), Positives = 68/103 (66%)
Frame = +1
Query: 97 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTH 276
+DR + FSPEGRL+QVEYA++A+ G TS+ +++S+ ++AA++ +L+ ++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAVKLGS-TSIGIKTSEGVLLAAEKRSTSKLMVNDAIEK 66
Query: 277 LFSLTERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIPV 405
+ + + IG G+IADSR+ V+RA+ EA N+ + Y +I V
Sbjct: 67 ISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRV 109
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 407 TSCAVRIRLTFSQVYTQNAEMRPLGCSMMLIAYDEESGPSVYKTDPSGYY 556
T + L F + + RP G +M+ D+E G ++ DPSG +
Sbjct: 113 TQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTF 161
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 71.7 bits (168), Expect = 3e-13
Identities = 38/105 (36%), Positives = 59/105 (56%)
Frame = +1
Query: 97 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTH 276
+DR ITIFSP+G L+QVEYA +A+ +G T+V +R D V+ ++ L D ++
Sbjct: 4 YDRAITIFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62
Query: 277 LFSLTERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIPVHI 411
+ + + + G+ AD+R V RAR E + YK E PV +
Sbjct: 63 IHMIDDHVMLAFAGLSADARVLVDRARIECQS--YKLTLEDPVTV 105
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 443 QVYTQNAEMRPLGCSMMLIAYDEESGPSVYKTDPSGYY 556
Q +TQ+ RP G SM++ +D + P ++KT+PSG Y
Sbjct: 117 QRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAY 154
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 69.3 bits (162), Expect = 2e-12
Identities = 40/98 (40%), Positives = 57/98 (58%)
Frame = +1
Query: 109 ITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTHLFSL 288
+T FSP G+L Q+EYAL A+ + G SV LR+ D V+A + NV L D +
Sbjct: 9 LTTFSPSGKLMQIEYALNAV-KNGQPSVGLRAKDGVVLATE-NVGSVLTDDQPKVE--QI 64
Query: 289 TERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIP 402
++ IGCV +GM D R V++AR A ++ YG E+P
Sbjct: 65 SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMP 102
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 443 QVYTQNAEMRPLGCSMMLIAYDEESG-PSVYKTDPSGYY 556
Q YTQ+ +RP G S+++ +D+ G P +++ DPSG Y
Sbjct: 115 QEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAY 153
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 68.1 bits (159), Expect = 4e-12
Identities = 36/121 (29%), Positives = 64/121 (52%)
Frame = +1
Query: 94 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVT 273
G+D + FSP+GR++QVEYA KA++ G T +A+R + VV A + + +L ++
Sbjct: 7 GYDLAASTFSPDGRIFQVEYAQKAVDNAG-TMIAIRGKNGVVVVADKLISSKLYTDNANP 65
Query: 274 HLFSLTERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIPVHILCRAHSLDILPSVH 453
+F++ + +G + G D + A EA W Y +P+ + A+S+ +H
Sbjct: 66 RMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNI--ANSVAEYIHIH 123
Query: 454 T 456
T
Sbjct: 124 T 124
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 67.3 bits (157), Expect = 7e-12
Identities = 33/114 (28%), Positives = 64/114 (56%)
Frame = +1
Query: 97 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTH 276
+D +T++SP+GRL+QVEYA++A+ QG T V ++S AV+ A + + L S
Sbjct: 6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSAT-VGIKSETHAVIVALKRAQNDL--SSHQKK 62
Query: 277 LFSLTERIGCVMTGMIADSRSQVQRARYEAANWQYKYGTEIPVHILCRAHSLDI 438
++ + G + G+++D R + + E ++W++ Y +P+ L + L +
Sbjct: 63 VYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKL 116
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 443 QVYTQNAEMRPLGCSMMLIAYDEESGPSVYKTDPS 547
Q TQ RP G +++ YD++ G + +TDPS
Sbjct: 117 QANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPS 150
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 195 CNRCQTTLVNRFKGVFDLVKPSFWRKYCNMSIETRATFSCHFLYELFYA 49
C+ C T LV + D+V P + Y ++T A LY LF+A
Sbjct: 116 CSACLTCLVLALNRILDMVCPMMVKTYFR-GMKTCAVLMAPVLYGLFFA 163
>Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical
protein ZK262.9 protein.
Length = 231
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 455 VCTLGRMSSECARHRMCTGISVPYLYC 375
+C L + SE H+ CTG++V YC
Sbjct: 82 LCLLSYVISEDGHHKGCTGLNVTCKYC 108
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 532 VHARPGLLVVRDQHHAAAQRTHLSILCVHLGECQANAHGTGCARGSRCRTCTA 374
+ AR G V+ + Q+ + LC L EC HG+ C G RC TC +
Sbjct: 326 LEAREGECVLPAASTISVQKVGIGALCSDLAECD---HGSTCVMG-RC-TCVS 373
>AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical
protein Y77E11A.1 protein.
Length = 451
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 101 IDILQYFLQKEGFTKSNTPLKRLTRVV*HLLHSGVVMLLWW 223
++ LQ FLQ+ G +N P+ + LL LLWW
Sbjct: 114 VNCLQRFLQEFGLVDANLPIGFVFSYPCELLSIRSARLLWW 154
>Z81537-1|CAB04372.1| 326|Caenorhabditis elegans Hypothetical
protein F41D3.1 protein.
Length = 326
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 404 CTSCAVRIRLTFSQVYTQNAEMR 472
CT+CA R +F Q Y NAE +
Sbjct: 29 CTACAAFFRRSFGQQYLCNAEKK 51
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 473 PLGCSMMLIAYDEESGPS-VYKTDPSGYYCS 562
P+G Y E S + V KT PSGYYC+
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 75
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 473 PLGCSMMLIAYDEESGPS-VYKTDPSGYYCS 562
P+G Y E S + V KT PSGYYC+
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 75
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 175 GGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTHLFSLTERI 300
G LTSV L++ A VA+ +PD L +S+T +F + E +
Sbjct: 3535 GLLTSVNLKA--AIQVASFERLPDSLDSTASITPVFKIQEHV 3574
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 175 GGLTSVALRSSDAAVVAAQRNVPDRLLDPSSVTHLFSLTERI 300
G LTSV L++ A VA+ +PD L +S+T +F + E +
Sbjct: 3535 GLLTSVNLKA--AIQVASFERLPDSLDSTASITPVFKIQEHV 3574
>AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical
protein Y51H4A.13 protein.
Length = 591
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 80 EKVARVSIDILQYFLQKEGFTKSNTPLKR 166
E + + SI I++YF+ GFTK+ + +++
Sbjct: 539 ESILQASISIMKYFVLYCGFTKTKSHIRK 567
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 473 PLGCSMMLIAYDEESGPS-VYKTDPSGYYCS 562
P+G Y E S + V KT PSGYYC+
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,062
Number of Sequences: 27780
Number of extensions: 278889
Number of successful extensions: 836
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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