Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G16
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 301 3e-83
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 152 3e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 152 3e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 5e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 95 5e-21
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 1e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 5e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 7e-05
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 30 0.23
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 1.2
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.2
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 8.8
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 8.8
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 8.8
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 25 8.8
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 8.8
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 8.8
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 301 bits (740), Expect = 3e-83
Identities = 147/154 (95%), Positives = 152/154 (98%)
Frame = +2
Query: 29 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 208
QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIF
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 121
Query: 209 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAK 388
AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+K
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSK 181
Query: 389 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIPK 490
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI K
Sbjct: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 215
Score = 301 bits (740), Expect = 3e-83
Identities = 147/154 (95%), Positives = 152/154 (98%)
Frame = +2
Query: 29 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 208
QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIF
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 197
Query: 209 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAK 388
AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+K
Sbjct: 198 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSK 257
Query: 389 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIPK 490
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI K
Sbjct: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 291
Score = 301 bits (740), Expect = 3e-83
Identities = 147/154 (95%), Positives = 152/154 (98%)
Frame = +2
Query: 29 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 208
QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIF
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 273
Query: 209 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAK 388
AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+K
Sbjct: 274 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSK 333
Query: 389 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIPK 490
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI K
Sbjct: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 367
Score = 272 bits (666), Expect = 3e-74
Identities = 132/139 (94%), Positives = 137/139 (98%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 254 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 433
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 434 FAGKQLEDGRTLSDYNIPK 490
FAGKQLEDGRTLSDYNI K
Sbjct: 121 FAGKQLEDGRTLSDYNIQK 139
Score = 182 bits (443), Expect = 3e-47
Identities = 88/92 (95%), Positives = 91/92 (98%)
Frame = +2
Query: 29 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 208
QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIF
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 349
Query: 209 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 304
AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 350 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (369), Expect = 3e-38
Identities = 76/88 (86%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 254 IQKESTLHLVLRLRGG-MQIFVKTLTGK 334
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 124 bits (299), Expect = 8e-30
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +2
Query: 302 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 481
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 482 IPK 490
I K
Sbjct: 61 IQK 63
Score = 34.7 bits (76), Expect = 0.008
Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +2
Query: 29 QKESTLHLVLRLRGG-MQIFVKTLTGK 106
QKESTLHLVLRLRGG ++ +K L K
Sbjct: 62 QKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (369), Expect = 3e-38
Identities = 76/88 (86%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 254 IQKESTLHLVLRLRGG-MQIFVKTLTGK 334
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 124 bits (299), Expect = 8e-30
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +2
Query: 302 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 481
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 482 IPK 490
I K
Sbjct: 61 IQK 63
Score = 34.7 bits (76), Expect = 0.008
Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +2
Query: 29 QKESTLHLVLRLRGG-MQIFVKTLTGK 106
QKESTLHLVLRLRGG ++ +K L K
Sbjct: 62 QKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 254 IQKESTLHLVLRLRGG 301
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 124 bits (299), Expect = 8e-30
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +2
Query: 302 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 481
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 482 IPK 490
I K
Sbjct: 61 IQK 63
Score = 33.9 bits (74), Expect = 0.014
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 29 QKESTLHLVLRLRGG 73
QKESTLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 254 IQKESTLHLVLRLRGG 301
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 124 bits (299), Expect = 8e-30
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +2
Query: 302 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 481
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 482 IPK 490
I K
Sbjct: 61 IQK 63
Score = 33.9 bits (74), Expect = 0.014
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 29 QKESTLHLVLRLRGG 73
QKESTLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 95.1 bits (226), Expect = 5e-21
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 254 IQKESTLHLVLRLRGG 301
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 74.5 bits (175), Expect = 8e-15
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = +2
Query: 302 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 481
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 482 IPKG 493
+ G
Sbjct: 61 LEGG 64
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 101 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 274
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 36.7 bits (81), Expect = 0.002
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 329 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 484
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGI 61
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 250
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 251 NIQKE 265
NI+++
Sbjct: 61 NIKEQ 65
Score = 41.9 bits (94), Expect = 5e-05
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 332 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 484
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNI 62
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 7e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 74 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 253
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 254 IQKESTLHLVLRL 292
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 302 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 481
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 482 IPKG 493
I G
Sbjct: 64 IQDG 67
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 29.9 bits (64), Expect = 0.23
Identities = 24/106 (22%), Positives = 40/106 (37%)
Frame = +2
Query: 194 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIE 373
+R AG +E D ++ K+ LV R G + V + G L ++ +
Sbjct: 123 ERAKAAGMNVELVAVGDDVSVGKKRGA-LVGRRGLGATVLVHKIAGSAAALGLDLHQVAQ 181
Query: 374 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIPKGIHTSPG 511
++ I + I G++ E +Y I GIH PG
Sbjct: 182 VAQSVIDNAATIAASLDHCAVPGRKFETNLGPDEYEIGMGIHNEPG 227
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 208 EDKTLLI--WWDTFFVLNFSFYIFNCVRWLNFEC 113
ED+T+L+ ++DT F L+F Y+ R + F C
Sbjct: 448 EDQTILLKSYFDTSFSLDFHVYLIGLFRKVLFAC 481
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 77 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 250
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 251 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 340
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 220 LLAGEDKTLLIWWDTF 173
LL+G D T LI WD F
Sbjct: 60 LLSGSDDTRLIVWDVF 75
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 416 DQQRLIFAGKQLEDGRTLSDYNIPKGIHTS 505
D L+ L DG LSD + P+GI+T+
Sbjct: 91 DVDLLLVDTGDLHDGNGLSDASDPEGIYTN 120
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 177 VSHQINSVLS-SPASNWKTVVLFLITTFKKNLHFTWSYVCAVV 302
+++Q ++LS S +W TV + +++ + + WS + VV
Sbjct: 227 LAYQYTNMLSASLLDSWATVAVVILSFIFLKVRYHWSQILGVV 269
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 12 LLNVVVRKNPHFTWSYVCAVVC 77
+ N+VVR + F W+Y+ V C
Sbjct: 235 ITNLVVRPSCKFPWTYIYFVEC 256
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 83 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 178
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 227 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 346
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,284
Number of Sequences: 5004
Number of extensions: 37617
Number of successful extensions: 166
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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