Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G16
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    28   0.049
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.15 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 0.049
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 247 IRKSTTVFQLLAGEDKT---LLIWWDTFFVLNFSFYIFNC 137
           I  ST + + L G + T   LLI + +F +LNF+   FNC
Sbjct: 117 ITNSTPLLKKLYGGNSTIIFLLIRFKSFSLLNFNLLFFNC 156



 Score = 24.2 bits (50), Expect = 0.80
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 424 LLIGRNAFFVLNFSFYIFNC 365
           LLI   +F +LNF+   FNC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 131 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 241
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 359 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 469
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 172 FVLNFSFYIFNCVRWLNF 119
           F   FSF I N V W  F
Sbjct: 365 FFFPFSFLILNVVYWSTF 382


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 219 NWKTVVLFLITTFKKNLHFTWSYVC 293
           N   + LF     K+N   T+ Y+C
Sbjct: 599 NLPKLALFATKDIKQNEEITFDYMC 623


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,884
Number of Sequences: 438
Number of extensions: 2549
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)