Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G15
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine rece...    27   6.7  

>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 318 IRHEVFCIRLSFYYFCCYRKKHDLYLKKNCGFLVTH 211
           I+H++  +RL+ +  CCYR K D   + N  F++ H
Sbjct: 364 IKHKLD-VRLTGFRSCCYRPKEDTVSESNQIFVIYH 398


>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 13  TKQKKCGGCVDAYDRVE*ILKQDSDSRHYFQYTF 114
           T+QKKC  C++ Y+ VE    +D+ +    + TF
Sbjct: 400 TEQKKCHQCLEVYETVEFCGTRDNHTNCPMENTF 433


>U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein125 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 394 VSDVGIYGILLVKVSKLVNN-KWSLIHFVYYQLNVSSKNVFYYLSKRQV 537
           V+ + I  +   + S L  N KW  I FVY  LN  S  +F+     Q+
Sbjct: 111 VTGITILALFENRFSLLTENLKWKKIRFVYISLNYLSAFLFFVYPMIQI 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,262
Number of Sequences: 27780
Number of extensions: 269571
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)