Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G15
(547 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 27 0.16
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 25 0.66
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 25 0.66
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 24 0.88
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 24 0.88
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 24 1.2
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 1.5
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 3.5
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 21 8.2
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 8.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 8.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 8.2
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 26.6 bits (56), Expect = 0.16
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 207 NCVLPKNHNFFLSINHAFFYNNKNNRKIAVYK 302
N + N+N+ + N+ + YNN N K YK
Sbjct: 87 NKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 24.6 bits (51), Expect = 0.66
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 322 NSSLLFLNILKEKCVFKVTRRVYFVSDV 405
NS + ILKE CV + R + D+
Sbjct: 24 NSKKTIMRILKEVCVLQANRACILIKDL 51
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 24.6 bits (51), Expect = 0.66
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 322 NSSLLFLNILKEKCVFKVTRRVYFVSDV 405
NS + ILKE CV + R + D+
Sbjct: 7 NSKKTIMRILKEVCVLQANRACILIKDL 34
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 0.88
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 222 KNHNFFLSINHAFFYNNKNNRKIAV--YKK 305
K H S+++ + YNN N +K+ YKK
Sbjct: 77 KEHKIISSLSNNYNYNNNNYKKLYCNNYKK 106
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 0.88
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 222 KNHNFFLSINHAFFYNNKNNRKIAV--YKK 305
K H S+++ + YNN N +K+ YKK
Sbjct: 77 KEHKIISSLSNNYNYNNNNYKKLYCNNYKK 106
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 222 KNHNFFLSINHAFFYNNKNNRKI 290
K H S+++ + YNN N +K+
Sbjct: 77 KEHKIISSLSNNYNYNNNNYKKL 99
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.4 bits (48), Expect = 1.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 225 NHNFFLSINHAFFYNNKNNRKIAVYKK 305
N+N + + N+ YNN NN YKK
Sbjct: 325 NNNNYNNNNYNNNYNNYNNNNYNNYKK 351
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 3.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 213 VLPKNHNFFLSINHAFFYNNKNNRKIAVYKK 305
++ N++ + N+ YNN NN YKK
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 21.0 bits (42), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 406 GIYGILLVKVSKLVNNKWSLIHFVYY 483
GIYGI L V+ + L H +YY
Sbjct: 255 GIYGIALSPVTNNLYYSPLLSHGLYY 280
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 106 YTFHTCSSFTFLQDI 150
+ H CSSF F D+
Sbjct: 79 WVIHPCSSFRFYWDL 93
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 106 YTFHTCSSFTFLQDI 150
+ H CSSF F D+
Sbjct: 79 WVIHPCSSFRFYWDL 93
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 106 YTFHTCSSFTFLQDI 150
+ H CSSF F D+
Sbjct: 79 WVIHPCSSFRFYWDL 93
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,296
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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