Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G14
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.80
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 28 0.80
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 4.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 7.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 9.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.80
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = -3
Query: 423 VPSLTSTPGIEAKQRDTS--LAACVNPARKRSTSTLGFSDKXXXXXXXXXXRTVSSKISA 250
V S +S+P + TS L+ P+ S+S+ S + SS I +
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIIS 274
Query: 249 FSNLATFSPSDCNALTISSLSSSKQRLMRARLLRSS 142
S+ ++ SP+ ++ SS SSS + + SS
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSS 310
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 336 STSTLGFSDKXXXXXXXXXXRTVSSKISAFSNLATFSPSDCNALTISSLSSSKQR 172
S+ST+ S + S S+FS+ + S S ++ T++S SSS R
Sbjct: 339 SSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVS-SSSSTSSSTLTSSSSSSSR 392
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = -3
Query: 417 SLTSTPGIEAKQRDTSLAACVNPARKRSTSTLGFSDKXXXXXXXXXXRTVSSKISAFSNL 238
S +S P + TS + + + ++S+ S T +S + S+
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295
Query: 237 ATFSPSDCNALTISSLSSS 181
++ SP+ ++ SS SSS
Sbjct: 296 SSSSPTSTSSTISSSSSSS 314
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 28.3 bits (60), Expect = 0.80
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = -1
Query: 479 RQQRAAYHSICVQGVSLAEYPASRPLQE*KPNNVTLHWLRA*IQLGSDPRPHLGSVTSVV 300
+Q ++++ + V+GV +S P ++ K N L WLRA + + +TS++
Sbjct: 64 KQHQSSHFATPVKGVE-----SSEPTEKKKRNKEAL-WLRARQKKWKEIFELCQKITSLL 117
Query: 299 GALVCEGDELSVPKYQLSPIWQRSLLQIV 213
G + S+ K L+ +W R Q++
Sbjct: 118 GGTILIDVSFSMEKDVLTYLWMRVHYQVI 146
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 258 ISAFSNLATFSPSDCNALTISSLSSSKQRLMRARLLRSSIGFIT 127
++ F + SP D LT + LS S ++ R R ++ + FIT
Sbjct: 307 LTIFDYYLSVSPKDITRLTNAILSLSMKQFERDRDIKKATDFIT 350
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 62 EIAYSLADDGPQPVSRTYQYRKVM 133
E+ +LA+D P+ VS+ Y+Y V+
Sbjct: 665 ELDLALAEDAPEFVSKVYRYLHVL 688
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 4.3
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -3
Query: 420 PSLTSTPGIEAKQRDTSLAACVNPARKRSTSTLGFSDKXXXXXXXXXXRTVSSKISAFSN 241
PS +ST + +S ++ + + S+S+ S + SS S+ S+
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 203
Query: 240 LATFSP-SDCNALTISSLSSSKQRLMRARLLRSSIGFIT 127
++ P + + + SS SSS + SS FIT
Sbjct: 204 SSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 98 PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 202
P +R + R K + ERKRR I D+LK+ +
Sbjct: 328 PYTRNPELRTSHK-LAERKRRKEIKELFDDLKDAL 361
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 74 SLADDGPQPVSRTYQYRKVMKPMLERKRRA 163
S+A P P+S ++ ++ PM R+ A
Sbjct: 467 SMAPPSPSPISPSFPLHEIQSPMPNRRMAA 496
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 323 LGSVTSVVGALVCEGDELSVPKYQLSPIWQRSLLQI 216
L +V+ +G++VC +LSV Y L + + +Q+
Sbjct: 770 LSTVSKHMGSVVCVNSDLSVNWYSLPNLREERKMQL 805
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,233
Number of Sequences: 5004
Number of extensions: 42431
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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