Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G14
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0520 + 18286435-18287279,18287818-18288697                       30   1.4  
07_03_0795 + 21567929-21568047,21569295-21569385,21569591-215697...    28   4.4  
05_01_0143 - 944169-947273                                             28   4.4  
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096...    28   4.4  
09_04_0432 + 17510820-17510996,17511076-17511546                       28   5.8  
08_02_1092 + 24267737-24268641,24269005-24269884                       28   5.8  
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724     28   5.8  
01_06_0928 + 33085403-33089224                                         27   7.6  

>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 456 FNLCPRCIIS*VPSLTSTPGIEAKQRDTSLAACVNPA 346
           F+L  RC +S     ++ PG++A QR+ + A CV PA
Sbjct: 323 FDLSLRCSVSPTVIKSANPGLDALQRNNA-AYCVQPA 358


>07_03_0795 +
           21567929-21568047,21569295-21569385,21569591-21569734,
           21569849-21570064,21570315-21570506
          Length = 253

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 505 WTGRRSIGTGSSALHIIQSVSKV 437
           W  + S G+G  ALH++ +VSK+
Sbjct: 52  WIRKDSAGSGKKALHLVNTVSKL 74


>05_01_0143 - 944169-947273
          Length = 1034

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 390  AKQRDTSLAACVNPARKRSTSTLGFSDK 307
            AK++  SL ACVNPA ++  S + F  K
Sbjct: 1007 AKKKKPSLLACVNPALQKQHSDMVFFTK 1034


>04_04_0476 -
           25508952-25509004,25509245-25509326,25509453-25509611,
           25509702-25509767,25509898-25510067,25510172-25510262,
           25510331-25510410,25510887-25511003,25511092-25511218,
           25511685-25511865,25511978-25512366,25512959-25513135,
           25513306-25513500,25513844-25514031,25514192-25514500,
           25514592-25514637
          Length = 809

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 71  YSLADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEK 250
           Y+L  DG   V    +  K  K  +++KRR+R  R + E++E M S      +NV  ++ 
Sbjct: 64  YALPGDGDLVVECEEEGEKGEK-RVKKKRRSRKKRKVKEMEEKMESKEDVSDDNVEDMQD 122

Query: 251 ADILE 265
            + +E
Sbjct: 123 GNDME 127


>09_04_0432 + 17510820-17510996,17511076-17511546
          Length = 215

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 146 ERKRRARINRCLDELKELMVSA 211
           ERKRR RIN  LD L+ L+ SA
Sbjct: 36  ERKRRERINAHLDTLRGLVPSA 57


>08_02_1092 + 24267737-24268641,24269005-24269884
          Length = 594

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 456 FNLCPRCIIS*VPSLTSTPGIEAKQRDTSLAACVNPA 346
           F+L  RC +S     ++ PG +A QR+   A CV PA
Sbjct: 343 FDLSLRCAVSPTVVKSANPGPDALQRNNQ-AYCVQPA 378


>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
          Length = 271

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 486 ILRRPVHRARLSPLLPRHLDT 548
           +LRRP+H   + PLL RHL +
Sbjct: 4   LLRRPLHTLPILPLLGRHLSS 24


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = +2

Query: 32  TEHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMKPM---------LERKRRARINRCLD 184
           TE  +  + Y+I   +A+ G Q          V KP+         L  K R  I++ L+
Sbjct: 46  TEDVLDELEYDILKRVAEKGAQASLMVASSNSVPKPLHAASNKMSNLRPKNRKLISK-LE 104

Query: 185 ELKELMVSA 211
           ELKE++V A
Sbjct: 105 ELKEILVEA 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,445
Number of Sequences: 37544
Number of extensions: 299433
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)