Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G12
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 142 3e-35
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.021
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 31 0.11
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 1.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.4
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 1.4
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 1.8
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 2.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 5.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 5.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 7.2
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 7.2
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 7.2
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 7.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 9.5
>SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 854
Score = 142 bits (344), Expect = 3e-35
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Frame = +1
Query: 7 RGTDLITPQKMLKTKAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSL 186
R D T + K FT+ICYSADGSC+L G SK+VCLY + +LIKKF +++N SL
Sbjct: 558 RFDDARTAENSSLNKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKFQLSKNESL 617
Query: 187 DAVNDFINRRLLSEFGNMALVE---QREDLEGGDVNIRLPGVKEGDMADRRVKPEVRVHC 357
V + +N R ++E G++ L++ + DLE ++ LPG + GD++ R+ +PE+ H
Sbjct: 618 QGVQEMLNSRKMTEAGSIELIDTQGEESDLE-DRIDRTLPGARRGDLSARKTRPEIICHG 676
Query: 358 IRFSPTGESFAVATTEGLLVYSQNAGIDGTFRPYRLESSSTPYGVRKLLKEASWGSALVG 537
++FSP+G +FA ATTEGL++YS D F P L+ TP + E + +LV
Sbjct: 677 VQFSPSGGAFAAATTEGLMIYSLYN--DFLFDPINLDMDITPSTTLTMCAEGEFLISLVM 734
Query: 538 AL 543
AL
Sbjct: 735 AL 736
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 33.5 bits (73), Expect = 0.021
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -2
Query: 333 NPPVGHVPLLDSRQTDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSYDKLL 154
NP G VPL+ QTD +P + FH +L + A++ + S R+VL+ D +
Sbjct: 173 NPDTGSVPLIHPEQTDRGLP-YAPDEKFHNSGSLKLPKGASLEDLSRSPSRAVLNEDGNV 231
Query: 153 DQ 148
D+
Sbjct: 232 DE 233
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 31.1 bits (67), Expect = 0.11
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 322 DRRVKPEVR--VHCIRFSPTGESFAVATTEGLLVYSQNAGIDGTFRPYRLESSSTPYGV 492
DR++ EV V + SP G A+A+ GLLV +D + P R+ STP+ V
Sbjct: 224 DRQLSIEVNQPVGAMSLSPCGRDIALASRYGLLVLD----LDNPYNPPRMLRHSTPWEV 278
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 64 ICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVN 198
+ ++ DGS GGN VCL+ D + +V QN ++ A++
Sbjct: 328 LTWNHDGSQFASGGNDNRVCLFKGSD-LRQPLYVWQQNAAVKALS 371
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 503 SSFLTPYGVELLSKRYGLKVPSMPAFWL*TSSPSVVATAKLSPVGEN-LMQCTLTSG 336
+S P L SK K S+P FWL S + A +S ++ +M T SG
Sbjct: 656 TSIQEPIASPLTSKPTPKKAASLPQFWLSPRSHNTARLASISSFAKSAVMNSTSASG 712
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 31 QKMLKTKAFT--TICYSADGSCILGGGNSKHVCLYSVKDSIL 150
Q++LK + T TI +S D IL G + VCL+ +++L
Sbjct: 571 QQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAENLL 612
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 70 YSADGSCILGGGNSKHVCLYSVKDSILIKKF 162
++ DG+ GGN VC++ + DS+ KKF
Sbjct: 297 WNYDGTQFASGGNDNLVCIFDI-DSLENKKF 326
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 349 VHCIRFSPTGESFAVATTEGLLVY 420
+ CIRF+ G AVAT G +Y
Sbjct: 67 ISCIRFTYDGSCLAVATEAGTFLY 90
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 213 TIYKIVNSIQRSVLSYDKLLDQNRIL 136
T++KI S ++ L+++KLLD + IL
Sbjct: 828 TVFKIAASPEKVKLAWEKLLDTHTIL 853
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC subunit
Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -3
Query: 413 SSPSVVATAKLSPVGENLMQ---CTLTSGLTLLSAMSPSLTP 297
SSP + +P+ L++ C LTS L ++ ++S ++TP
Sbjct: 895 SSPHTQISLDKNPLNRRLLEHVCCDLTSKLLIVVSLSNTITP 936
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 5.5
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = -3
Query: 488 PYGVELLSKRYGLKVPSMPAFWL*TSSPSVVATAKLSPVGENLMQCTLTSGLTLLSAMSP 309
P V L K + + SMP + PSV + AKL P N L +L AM P
Sbjct: 1923 PAPVPLTGKETAVPLSSMP-----NAPPSVASNAKLPPASNNRKVDPLED---ILQAMPP 1974
Query: 308 SLT 300
T
Sbjct: 1975 PTT 1977
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 393 DGETFASRGKPYAVHSHLGFNPPVGHVPLLDSRQTDVHIPT 271
DG T S ++++ GF PP + + SR H P+
Sbjct: 124 DGSTLNSNNTTQQLNNNNGFQPPPQNPGISKSRIAQYHQPS 164
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -2
Query: 309 LLDSRQTDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSY 166
LL + D+H+ +++LA + T+ I+ SVL+Y
Sbjct: 567 LLKKEKLDLHLKPYRILATGPTHGAVQFVPSKTLATILAEYHGSVLAY 614
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 7.2
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Frame = -2
Query: 495 PNTIRSRTTLQTVWPESAVDAGVLAVNEQPL----CRGDGETFASRGKPYAVHSHLGFNP 328
P+ RT LQT W E+ AG+ + L G T Y S FN
Sbjct: 135 PSAKPRRTRLQTAWKEATNSAGLSLRSASALDVLKNSGPATTSLLSSTTYPFDSLNAFNE 194
Query: 327 PV-GHVP 310
P HVP
Sbjct: 195 PSHSHVP 201
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 148 LIKKFVI-TQNRSLDAVNDFINRRLLSEF 231
++KKF+I +++ ++ V DF +R L EF
Sbjct: 46 ILKKFLIDSRDYKVEVVQDFCSRSLTDEF 74
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 225 TQQATIYKIVNSIQRSVLSYDKLLDQNRILDAV 127
T++ + +V+++ R YD +LD N +LD+V
Sbjct: 214 TEKLKMLPLVDAVLRKTHLYDTILD-NNVLDSV 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,501
Number of Sequences: 5004
Number of extensions: 46003
Number of successful extensions: 167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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