Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G12
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 128 3e-30
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 37 0.009
06_03_0662 - 23229957-23230204,23231021-23231160,23231257-232313... 32 0.26
02_01_0790 + 5925048-5925165,5926133-5926268,5926832-5926913,592... 32 0.26
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317... 31 0.59
03_04_0178 - 18131238-18131629,18137138-18137303,18137711-181379... 30 1.0
04_04_1003 - 30031099-30031194,30031274-30031352,30031566-300318... 30 1.4
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 29 3.2
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137... 28 4.2
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 28 4.2
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 28 5.5
02_04_0041 + 19177225-19177327,19178322-19178433,19178617-191787... 28 5.5
07_03_0971 + 23038409-23039134,23040321-23040611 27 7.3
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 27 9.7
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 9.7
>05_06_0102 - 25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 128 bits (309), Expect = 3e-30
Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Frame = +1
Query: 49 KAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLSE 228
K FTT+CYSADG+ IL GGNSK++C+Y V + +L+++F IT+N SLD V DF+N + +++
Sbjct: 610 KYFTTLCYSADGTYILAGGNSKYICMYDVGEQVLLRRFQITRNLSLDGVLDFLNSKKMTD 669
Query: 229 FGNMALVEQRE-DLEGG-DVNIR--LPGVKEGDMADRRVKPEVRVHCIRFSPTGESFAVA 396
G + L++ + D+E G D R L G MA+R +P R C++F+PTG SFA A
Sbjct: 670 AGALDLIDDEDSDVEEGIDQQTRGNLGLGLPGSMANRG-RPIARTKCVKFAPTGRSFAAA 728
Query: 397 TTEGLLVYSQNAGIDGTFRPYRLESSSTPYGVRKLLKEASWGSALVGAL 543
TT+G+L+YS + F P L+ TP V + L+E AL+ +L
Sbjct: 729 TTDGVLLYSVDDSF--IFDPTDLDIDVTPEKVEEALEENQQQRALLLSL 775
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 37.1 bits (82), Expect = 0.009
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = -2
Query: 336 FNPPVGHVP--LLDSRQTDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSV-LSY 166
FN G P LL + D+ P + L R ++LT Q + +S R V Y
Sbjct: 465 FNATPGSTPHGLLAMGKVDLMHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGAGY 524
Query: 165 DKLLDQNRILDAVEADMFRVTATQNTGTVG*ITYSRESLGLEHLL 31
D + R+ A +F TGT+ I Y+ +SL +E LL
Sbjct: 525 DLEHQRRRMDPATNEPLFTNCTRDFTGTIDYIFYTADSLSVESLL 569
>06_03_0662 -
23229957-23230204,23231021-23231160,23231257-23231394,
23231501-23231676,23232071-23232152,23233531-23233666,
23237028-23237145
Length = 345
Score = 32.3 bits (70), Expect = 0.26
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 349 VHCIRFSPTGESFAVATTEGLL 414
VHC+RF+P GES+A + +G +
Sbjct: 273 VHCVRFAPGGESYASGSEDGTI 294
>02_01_0790 +
5925048-5925165,5926133-5926268,5926832-5926913,
5927772-5927947,5928594-5928680,5928817-5928956,
5929546-5929784
Length = 325
Score = 32.3 bits (70), Expect = 0.26
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 349 VHCIRFSPTGESFAVATTEGLL 414
VHC+RF+P GES+A + +G +
Sbjct: 256 VHCVRFAPGGESYASGSEDGTI 277
>01_04_0102 +
16030094-16030462,16030595-16030714,16031715-16031792,
16032760-16032933,16033844-16033921,16034338-16034510,
16034757-16034912,16036460-16036621,16036815-16036826,
16036947-16036962,16037663-16037875
Length = 516
Score = 31.1 bits (67), Expect = 0.59
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Frame = +1
Query: 70 YSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFI---NRRLLSEFGNM 240
+SADGS ++GG H+ +Y+ + I K IT + V+D ++R L+ + ++
Sbjct: 111 FSADGSLLIGGFRGSHIRIYNAEKKWTIHK-DITCKKLRWTVSDIALSPDQRYLA-YSSL 168
Query: 241 ALVEQREDLEGG--DVNIRLPGVKEG-DMADRRVKPEVRVHCIRFSPTGESFAVA-TTEG 408
+ + D++ G + + + V EG + ++ + ++FS G V E
Sbjct: 169 SPIVHMVDIQNGMRESHANITQVHEGLEFSNDDDGFSFAIFSVKFSKDGRELVVGNNNES 228
Query: 409 LLVY 420
+ +Y
Sbjct: 229 ICIY 232
>03_04_0178 -
18131238-18131629,18137138-18137303,18137711-18137902,
18138070-18138258
Length = 312
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 528 SGPPAGFLQQFPNTIRSRTTLQTVWPESAVDAGVLAV 418
+GP AG L+ F ++T L+TV P++ A +LAV
Sbjct: 83 AGPNAGSLRGFEVVDNAKTLLETVCPQTVSCADILAV 119
>04_04_1003 -
30031099-30031194,30031274-30031352,30031566-30031819,
30032003-30032029,30032135-30032761
Length = 360
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 291 TDVHIPTFQVLALFHQRHVTELTQQATIYKIVNSIQRSVLSYD 163
T P L QR++ E + +KI+N ++R+++ YD
Sbjct: 180 TSTMFPLLGKFGLLEQRNIEEKVLELNSHKIINLLKRALVGYD 222
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -1
Query: 286 CSHPHL---PGPRAVPPAPCYRTHSTG 215
CS HL P P PP P Y+ H+TG
Sbjct: 15 CSRRHLFFAPPPPPPPPMPAYQYHATG 41
>04_04_1667 +
35211776-35212132,35212640-35212727,35213573-35213705,
35213806-35214616
Length = 462
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 187 DAVNDFINRRLLSEFGNMALVEQREDLEGGDVNIRLP 297
D DF + R SEFG AL Q ++ +G DVN P
Sbjct: 307 DHSTDFSSSRF-SEFGGGALQGQEQEQDGDDVNKERP 342
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 28 PQKMLKTKAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKF 162
P ++K + SADG + GG +H+ L+ V+ I+ F
Sbjct: 213 PLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAF 257
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 118 VCLYSVKDSILIKKFVITQNRSLDAV-NDFINRRLLSEFGNMALVEQREDLEGGDVNIRL 294
+C+ D+I+ K V+ Q R DA+ ++ + + G+ L++ +D E R+
Sbjct: 269 LCISLAMDTIIRKTNVLRQGRWKDAIRSELVLDSTTGQTGSAPLMQLGQDGEYDLSGSRI 328
Query: 295 PGVK 306
PG+K
Sbjct: 329 PGLK 332
>02_04_0041 +
19177225-19177327,19178322-19178433,19178617-19178728,
19178992-19179078,19179161-19179279,19180204-19180306
Length = 211
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 316 MADRRVKPEVRVHCI---RFSPTGESFAVATTEGLLVYSQNAGIDGTFRPYRL 465
+ +R + P+V+ CI R + +T +G+++ +NAGI+ TFR RL
Sbjct: 120 LGEREI-PDVQPGCILQMRLQVPEKKRRESTLKGIVIARRNAGINTTFRLRRL 171
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 325 RRVKPEVR-VHCIRFSPTGESFAVATTEG 408
R P R V C+RFSP G A A+ +G
Sbjct: 19 RAATPHSRAVSCVRFSPCGRLLATASLDG 47
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 387 RRRHDRGAARLQPERRHR-RHF 449
R RHDR +RL+P R R RH+
Sbjct: 271 RLRHDRSPSRLEPSPRDRGRHY 292
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 217 LLSEFGNMALVEQREDLEGGDVNIRLPGVKEGDMADRRVKPEVRVHCI 360
L+ GN+ V + LE GD+ RL +++GD+ P V H +
Sbjct: 371 LVRRNGNLIFVRKANQLEIGDIAYRL--LQDGDLVLVNSPPSVHQHSL 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,653
Number of Sequences: 37544
Number of extensions: 356329
Number of successful extensions: 1224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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