Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G12
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...   142   1e-34
AC025716-6|AAK95889.1|  401|Caenorhabditis elegans Hypothetical ...    33   0.13 
U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical pr...    30   0.94 
AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical protein
            F55F8.3 protein.
          Length = 910

 Score =  142 bits (344), Expect = 1e-34
 Identities = 75/185 (40%), Positives = 117/185 (63%), Gaps = 5/185 (2%)
 Frame = +1

Query: 4    ARGT-DLITPQKMLKTKAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNR 180
            ARG+ D IT Q   KTK FT I +S DG+ +L GG S + CLYSV + +++KK+ IT NR
Sbjct: 573  ARGSRDTITRQSAAKTKTFTRIRFSPDGNLLLAGGESNNFCLYSVPERMILKKWQITANR 632

Query: 181  SLDAVNDFINRRLLSEFGNMALV---EQREDLE-GGDVNIRLPGVKEGDMADRRVKPEVR 348
            SLD V    NRR  +EFGNM LV   ++ ++LE    ++I+LPG K  D+ +RR +PEV 
Sbjct: 633  SLDGVILDFNRRNFTEFGNMQLVDTSDEEDELEPNNKMSIKLPGTKNFDLGERRARPEVN 692

Query: 349  VHCIRFSPTGESFAVATTEGLLVYSQNAGIDGTFRPYRLESSSTPYGVRKLLKEASWGSA 528
            ++ + + PTG  FA+ +TEG+ VYS +      F P++L+S +    +++ +    + +A
Sbjct: 693  IYEVTYCPTGRRFAICSTEGVSVYSLDT--ISMFDPFQLDSQTNAEVIKRAVWNNDYSTA 750

Query: 529  LVGAL 543
            ++ +L
Sbjct: 751  IMASL 755



 Score = 27.1 bits (57), Expect = 8.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 358 IRFSPTGESFAVATTEGLLVY 420
           ++FSP G+  AV T++G++ +
Sbjct: 532 VKFSPAGDEIAVLTSDGVITF 552


>AC025716-6|AAK95889.1|  401|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.9 protein.
          Length = 401

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 58  TTICYSAD--GSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRLLS 225
           T +C+S D  G  +  G    HV  Y+V D  LI + ++T+  S+  +  + NR + S
Sbjct: 282 TALCFSGDEGGKAVFVGFEDGHVAAYNVSDRRLIGE-IVTKKGSVTCLKYYCNRLIAS 338


>U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical
           protein F33G12.2 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 43  KTKAFTTICYSADGSCILGGGNSKHVCLYSVKDSILIKKFVITQNRSLDAVNDFINRRL 219
           K  A   + Y+ DG+  +  G+ K V L++   S L+K +  T N  LDA +   N ++
Sbjct: 15  KQGAVRAVRYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSDNSQI 73


>AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical
           protein CD4.3 protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +1

Query: 163 VITQNRSLDAVNDFINRRLLSEFGNMALVEQREDLEGGDVNIRLPGVKEGDMADRRVKPE 342
           VI+QNR L ++ + +  R  S        + RE  E   +N+R+ G   G +   + +  
Sbjct: 12  VISQNRGLASLRETVGERDASLLYEPKFQDSREFPEYNTINVRIQGHDFGSL--EKYQAY 69

Query: 343 VRVHCIRFSPT-GESFAVAT-TEGLLVY 420
           +     RF  T  +S+AVA  T+  + Y
Sbjct: 70  IHKTAKRFGFTVVDSYAVAAQTQKAITY 97


>Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical
           protein W04A8.5 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 327 PVGHVPLLDSRQTDVHIPTFQVLALFHQRHVTE 229
           P+ ++PL+  R+   ++PTF +  L H    T+
Sbjct: 8   PLCNLPLISLREVIDYLPTFDIFVLLHTSQKTK 40


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 473 LLSKRYGLKVPSMPAFWL*TSSPSVVATAKLSP 375
           ++S   G K  S+P+FW+   +P+ VAT    P
Sbjct: 161 VMSNMKGDKSTSLPSFWIPELNPTAVATKLEKP 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,861,938
Number of Sequences: 27780
Number of extensions: 267635
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)