Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G12
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 139 DSILIKKFVITQNR 180
           D++LIK+ V+T NR
Sbjct: 230 DNVLIKELVVTPNR 243


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 187 DAVNDFINRRLLSEFGNM 240
           D +ND+INR   S F N+
Sbjct: 123 DDLNDYINRLNYSAFVNL 140


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 427  NAGIDGTFRPYRLESSSTPY 486
            N  I G +  YRL SS  PY
Sbjct: 1006 NGEILGYYVGYRLSSSEKPY 1025


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 TELTQQATIYKIVNSIQRSVLSYDKLLDQNRI 139
           TE+  + T  ++V+ +      +D L ++NR+
Sbjct: 434 TEICSRITPMEVVSMLNAMYSLFDTLTERNRV 465


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 177 VLSYDKLLDQNRILDAVEADMFRVTATQNTGTVG*ITYSRES 52
           +  +D +LDQN+  D ++      T    +G    IT S ES
Sbjct: 821 ISDFDAILDQNKFKDIIKIKTIGSTYMAASG----ITESAES 858


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,954
Number of Sequences: 438
Number of extensions: 3353
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)