Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G11
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0650 - 19708479-19710507,19711033-19711889                       29   2.4  
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130...    27   9.5  

>08_02_0650 - 19708479-19710507,19711033-19711889
          Length = 961

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 458 WVKIFFRIYSILLRSKGGHLLRTFFLRIFEVLSLAPQNKRSAMLLPIYLWIIPKVHTMT 282
           WV +     S +++ +G H L      +F   S  P + +S +L   YL I P+ HT+T
Sbjct: 403 WVWVLNSFGSTVMKDQGSHELAVVKRILFLSYSDLPHHLKSCLL---YLSIFPEDHTIT 458


>04_04_0918 -
           29411239-29411373,29412276-29412526,29412772-29413009,
           29413133-29414251,29414540-29415106
          Length = 769

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 358 WHHRINVLRCYFQYTYG*YQKYI 290
           W HR++ L   F+  Y  YQKY+
Sbjct: 340 WRHRLSSLSDLFENGYSQYQKYL 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,530,393
Number of Sequences: 37544
Number of extensions: 227496
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)