Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G11
         (534 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dy...    32   0.43 
AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,...    32   0.43 
AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,...    32   0.43 

>L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dynein
            heavy chian protein.
          Length = 4639

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 352  GAKESTSKILRKKVLKRWPPLERRSIEYIRKNIFTHMTLAE*CM--*VTEKKDYDW 513
            G  EST  +L   VL+  PPL RR +E++        T+    +   VT  K + W
Sbjct: 1772 GNVESTLNVLADSVLQEQPPLRRRKLEHLINEFVHKRTVTRRLLNNGVTSPKSFQW 1827


>AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,
            isoform B protein.
          Length = 3388

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 352  GAKESTSKILRKKVLKRWPPLERRSIEYIRKNIFTHMTLAE*CM--*VTEKKDYDW 513
            G  EST  +L   VL+  PPL RR +E++        T+    +   VT  K + W
Sbjct: 1772 GNVESTLNVLADSVLQEQPPLRRRKLEHLINEFVHKRTVTRRLLNNGVTSPKSFQW 1827


>AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,
            isoform A protein.
          Length = 4639

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 352  GAKESTSKILRKKVLKRWPPLERRSIEYIRKNIFTHMTLAE*CM--*VTEKKDYDW 513
            G  EST  +L   VL+  PPL RR +E++        T+    +   VT  K + W
Sbjct: 1772 GNVESTLNVLADSVLQEQPPLRRRKLEHLINEFVHKRTVTRRLLNNGVTSPKSFQW 1827


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,387,237
Number of Sequences: 53049
Number of extensions: 399015
Number of successful extensions: 1097
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)