Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G11
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical ... 31 0.39
AF025454-7|AAC71154.3| 367|Caenorhabditis elegans Hypothetical ... 29 2.1
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 29 2.8
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 29 2.8
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 29 2.8
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 29 2.8
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 2.8
AF067942-8|AAG45575.1| 349|Caenorhabditis elegans Serpentine re... 28 3.7
AF016675-2|AAB66139.1| 357|Caenorhabditis elegans Hypothetical ... 28 4.8
AF016441-7|AAB65908.1| 344|Caenorhabditis elegans Hypothetical ... 28 4.8
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 27 6.4
>AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.4 protein.
Length = 688
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Frame = -2
Query: 503 SFFSVTHIHYSASVMWVKIFFRI--YSILL--RSKGGHLL 396
++ T++H+ +V+W+K+ FR+ ++ L R +GGH L
Sbjct: 14 NYLEATYVHHDLNVVWLKLSFRVPLETLFLEYRQQGGHTL 53
>AF025454-7|AAC71154.3| 367|Caenorhabditis elegans Hypothetical
protein F34D6.4 protein.
Length = 367
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -2
Query: 485 HIHYSASVMWVKIFFRIYSILLRSKGGHLLRTFFLRIFEVLSLAPQNKRSAMLLPIYLW 309
HI SA + + R+ LLR L FF IF V + QN + + ++ W
Sbjct: 17 HIFLSAETFFSRFLLRVTYQLLRPSQISFL--FFFSIFYVFKMYVQNVKDHITFAVFFW 73
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 200 MLDHCSGMLAGLKSFIW*F--LLINLCFY 280
M+D SG+ GLKS IW LL LCF+
Sbjct: 234 MIDFYSGLEIGLKSDIWALGVLLYRLCFF 262
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 200 MLDHCSGMLAGLKSFIW*F--LLINLCFY 280
M+D SG+ GLKS IW LL LCF+
Sbjct: 234 MIDFYSGLEIGLKSDIWALGVLLYRLCFF 262
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 200 MLDHCSGMLAGLKSFIW*F--LLINLCFY 280
M+D SG+ GLKS IW LL LCF+
Sbjct: 234 MIDFYSGLEIGLKSDIWALGVLLYRLCFF 262
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 200 MLDHCSGMLAGLKSFIW*F--LLINLCFY 280
M+D SG+ GLKS IW LL LCF+
Sbjct: 234 MIDFYSGLEIGLKSDIWALGVLLYRLCFF 262
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 268 FMFLYVIVCTFGIIHKYIGSNIAERLFCGAKESTSKILRKKVLKRWPPLERRSIEYIRK- 444
F++ YV+VC F + + G + +F A S + K +P ERRSIE +
Sbjct: 107 FIYRYVVVCDFKKMEYFNGGYLMFWVFGSAACGVSMCILK--FFAFPETERRSIELSEEF 164
Query: 445 NIFTHMTL 468
+++ ++T+
Sbjct: 165 SLYYNLTM 172
>AF067942-8|AAG45575.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein62 protein.
Length = 349
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 107 ENTIINLKLT*IHKLYA--LMNIFCKEKLKKKLMLDHCS 217
+N + +L + +H+ Y L++IFCKEK+ K + + CS
Sbjct: 305 QNGVASLSILMVHRPYRKFLVSIFCKEKV-KVIQISVCS 342
>AF016675-2|AAB66139.1| 357|Caenorhabditis elegans Hypothetical
protein T27B7.7 protein.
Length = 357
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 143 EFMSILDLLSYFHTRFLFIYRYSDGYRVKD 54
E++ +L+LLSYF T L I + Y ++D
Sbjct: 163 EYVYLLELLSYFDTSVLRIIKIKSYYMLRD 192
>AF016441-7|AAB65908.1| 344|Caenorhabditis elegans Hypothetical
protein M03F8.1 protein.
Length = 344
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 270 KLINKNYHMKDLSPANIPEQWSN 202
K I +NYH+ + SP+ I W+N
Sbjct: 72 KYIRENYHVNETSPSRIWVYWTN 94
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
protein F48E3.3 protein.
Length = 1493
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 355 AKESTSKILRKKVLKRWPPLERRSIE 432
AK S S +LRK+VL+ LE+ SIE
Sbjct: 323 AKTSVSDLLRKEVLQNRKMLEKASIE 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,656,705
Number of Sequences: 27780
Number of extensions: 234919
Number of successful extensions: 630
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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