Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G11
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   4.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.9  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 164 SLKHIIYEFMSILDLLSYFHT 102
           S+   IY F+S++ + SYF T
Sbjct: 3   SMLRCIYLFLSVILITSYFVT 23


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 452 KIFFRIYSILLRSKGGHLLRTFFLRIFEVLSLAPQN 345
           ++ F+++     SKGG L  T   R  E  + APQ+
Sbjct: 350 EVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQH 385


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 452 KIFFRIYSILLRSKGGHLLRTFFLRIFEVLSLAPQN 345
           ++ F+++     SKGG L  T   R  E  + APQ+
Sbjct: 350 EVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQH 385


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 443 FRIYSILLRSKGGHLLRTFFLRIFEVLSLAPQN 345
           F+++     SKGG L  T   R  E  + APQ+
Sbjct: 291 FKVHDPKAHSKGGTLENTINGRADEEAAPAPQH 323


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 341 VYSVVPKKVPRRF*GRKFL 397
           VY+V  +K+P  F   KF+
Sbjct: 690 VYAVKTRKIPENFNESKFI 708


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 341 VYSVVPKKVPRRF*GRKFL 397
           VY+V  +K+P  F   KF+
Sbjct: 780 VYAVKTRKIPENFNESKFI 798


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,399
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)