Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G10
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   1.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.3  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    25   7.1  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 401 NGNLCTHNLCYCHVAKMDFQSSINVTKFQQNCVLFCSIFPW 523
           N  +C +   Y HVA+M  Q +++      NC + C+ + W
Sbjct: 754 NMMMCNNTSRY-HVARMALQHALHNPTVAVNCNMLCAKYAW 793


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 229 QKNYQESPYKIGAILIE-P*KIDIKSKSLT--WLYY 327
           QKNY+ES Y    +LI+ P ++D   K L   W +Y
Sbjct: 230 QKNYEESIYLYARLLIKFPNRLDYSEKYLNSLWNFY 265


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +1

Query: 229 QKNYQESPYKIGAILIEP*KI----DIKSKSLTWLY 324
           QKNY+E+  K G  L++   I     ++++++ WLY
Sbjct: 45  QKNYEEAVDKYGQALMQSESIHGSESLENRNVLWLY 80


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 461 IENPS*PHDSSTNCVYTDCHYLRRR 387
           + N S PH +S+N +++D  + +RR
Sbjct: 372 VNNWSIPHSASSNSLFSDHSFSKRR 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,913
Number of Sequences: 5004
Number of extensions: 41429
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)