Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G10
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871...    31   0.58 
11_06_0511 - 24434007-24436814                                         29   2.4  
10_01_0206 - 2206359-2209142                                           28   5.4  
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916           27   7.2  
11_01_0791 + 6627961-6630702                                           27   7.2  
02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319     27   7.2  
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     27   9.5  
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126...    27   9.5  

>02_04_0562 -
           23886272-23886357,23886456-23886571,23887045-23887127,
           23887683-23887829,23887946-23887993,23888166-23888384,
           23889370-23889541,23889636-23889700,23890386-23890512,
           23891358-23891450,23891520-23891629,23891722-23891868,
           23892161-23892473,23892580-23893178
          Length = 774

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -2

Query: 219 NSRSTLFFLIYLPRIVNMC 163
           ++ S L FLIYLPR+VNMC
Sbjct: 379 DNMSRLPFLIYLPRLVNMC 397


>11_06_0511 - 24434007-24436814
          Length = 935

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 437 HVAKMDFQSSINVTKFQQNCVLFCSIFPWSFI 532
           +V K+ + S  N+    +NC+L+CS FP  F+
Sbjct: 453 NVQKVLYLSYKNLPMHLKNCLLYCSTFPAGFL 484


>10_01_0206 - 2206359-2209142
          Length = 927

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 437 HVAKMDFQSSINVTKFQQNCVLFCSIFPWSFI 532
           HV  + + S I +  + ++C L+C++FP  +I
Sbjct: 415 HVRNILYLSFIYLPTYLKSCFLYCTLFPEDYI 446


>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
          Length = 259

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 413 CTHNLCYCHVAKMDFQSSIN 472
           CT  L YC VAK D+ + IN
Sbjct: 209 CTRCLMYCMVAKKDYPTCIN 228


>11_01_0791 + 6627961-6630702
          Length = 913

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 485 QQNCVLFCSIFPWSF 529
           Q+NC L+CS+FP  F
Sbjct: 427 QKNCFLYCSLFPEDF 441


>02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319
          Length = 322

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 350 EKDKKLNPKIHSFFFLDNGNLCTHNLC 430
           EKD   N  +H+F+ +DN       LC
Sbjct: 93  EKDGPPNASLHAFYVIDNAKAAVEALC 119


>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 488 QNCVLFCSIFPWSF 529
           +NC LFCS+FP  F
Sbjct: 418 RNCFLFCSLFPLDF 431


>01_03_0278 -
           14509481-14509506,14510700-14512291,14512547-14512638,
           14513030-14514412
          Length = 1030

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/46 (19%), Positives = 22/46 (47%)
 Frame = +2

Query: 395 LDNGNLCTHNLCYCHVAKMDFQSSINVTKFQQNCVLFCSIFPWSFI 532
           L   ++C       H+ K+ +    ++  + + C  FC++FP  ++
Sbjct: 411 LMRSSICNEETGILHILKLSYD---DLPSYMKQCFAFCAMFPKDYV 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,292
Number of Sequences: 37544
Number of extensions: 211086
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)