Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G10
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   2.8  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 452 PS*PHDSS--TNCVYTDCHYLRRRRNVFLGSVFYLSQEKAMVSR*YSQVNDFDFISIFQG 279
           PS P DSS     VY      RRRR +  GS+  +  E+ M  R        DF +IFQ 
Sbjct: 152 PSPPSDSSLIVRQVYDFMEQKRRRRAMLCGSLEEILSEQEMTLR--HPATSEDFTTIFQA 209

Query: 278 SI 273
            +
Sbjct: 210 QM 211


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 452 PS*PHDSS--TNCVYTDCHYLRRRRNVFLGSVFYLSQEKAMVSR*YSQVNDFDFISIFQG 279
           PS P DSS     VY      RRRR +  GS+  +  E+ M  R        DF +IFQ 
Sbjct: 152 PSPPSDSSLIVRQVYDFMEQKRRRRAMLCGSLEEILSEQEMTLR--HPATSEDFTTIFQA 209

Query: 278 SI 273
            +
Sbjct: 210 QM 211


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 443 PHDSSTNCVYTDCHYLRRRRNVFLGSVFYLSQEKAMVSR*YSQVNDFDF 297
           PHDSST  V  +C  +  ++  F+  +  +   K  + + Y  VN FDF
Sbjct: 464 PHDSSTRMVEDECDVIDLKQTPFIACLSKIRANKEALPK-YKCVN-FDF 510


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -2

Query: 306 FRFYINFSRLYQNSADLVRTFLIVFLTS-HNSRSTLFFL-----IYLPRIVNMCYL 157
           F+F++  + +Y  +  ++  F+  F  S  N +ST F++     IYL R   +C+L
Sbjct: 92  FQFFVIGTMIYLTAYSVLEMFMFRFRASLFNYKSTYFYIYLKANIYLFRFAMLCFL 147


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -2

Query: 306 FRFYINFSRLYQNSADLVRTFLIVFLTS-HNSRSTLFFL-----IYLPRIVNMCYL 157
           F+F++  + +Y  +  ++  F+  F  S  N +ST F++     IYL R   +C+L
Sbjct: 92  FQFFVIGTMIYLTAYSVLEMFMFRFRASLFNYKSTYFYIYLKANIYLFRFAMLCFL 147


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 447 RWIFNLLSTLPNSSKTVS-YSARYFHGALS 533
           +W FNL+S  PNS+ T   Y  +Y  G +S
Sbjct: 684 QWFFNLVSDSPNSACTFKVYQKKYNLGGMS 713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,966
Number of Sequences: 27780
Number of extensions: 222878
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)