Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G09
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   114   1e-26
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   114   1e-26
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   114   1e-26
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    43   4e-05
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    27   1.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.6  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  114 bits (274), Expect = 1e-26
 Identities = 48/68 (70%), Positives = 59/68 (86%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
           VLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 432 PLGRFAVR 409
           PLGRFAVR
Sbjct: 418 PLGRFAVR 425


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  114 bits (274), Expect = 1e-26
 Identities = 48/68 (70%), Positives = 59/68 (86%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
           VLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 432 PLGRFAVR 409
           PLGRFAVR
Sbjct: 418 PLGRFAVR 425


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  114 bits (274), Expect = 1e-26
 Identities = 48/68 (70%), Positives = 59/68 (86%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
           VLDCHTAHIACKFAE+ EK+DRR+GK  E++PK +KSGDA I  +VPSKP+CVE+F ++ 
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 432 PLGRFAVR 409
           PLGRFAVR
Sbjct: 418 PLGRFAVR 425


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
           V+  HTA     FA++  K+D+ T + ++  P     G   I  L    P+C+E F+++ 
Sbjct: 580 VMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 638

Query: 432 PLGRFAVR 409
            +GRF +R
Sbjct: 639 YMGRFTLR 646


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 488 MAASPDLMDLGLSSVDLPVRRSTFS 562
           ++ +PDL D+ LSSVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 319 SAALVTLPPPASLKFTAFITPTATVFCLMXTHGETTEG 432
           S  +VTLPPPAS   ++F T T T      +   TT G
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTG 219


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 304 PLVAFSAALVTLPPPASLKFTAFITPTATVFCLMXTHGETT 426
           P  + ++   T+PP  S+  T  + PT ++     T   TT
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,052
Number of Sequences: 5004
Number of extensions: 52239
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)