Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G09
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 103 1e-22
03_01_0547 + 4093196-4093657,4094267-4095148 103 1e-22
03_01_0544 + 4082528-4082989,4083585-4084466 103 1e-22
03_01_0543 + 4076981-4077442,4078145-4079026 103 1e-22
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 43 2e-04
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 39 0.003
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 36 0.019
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 36 0.019
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 1.7
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 2.9
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305... 29 2.9
10_06_0096 + 10612910-10613132,10613195-10613361 28 5.1
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 5.1
11_06_0596 + 25385744-25388890 28 6.7
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 6.7
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 28 6.7
03_05_0896 - 28592658-28593331,28594069-28595455 27 8.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 103 bits (247), Expect = 1e-22
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = -1
Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
VLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 432 PLGRFAVR 409
PLGRFAVR
Sbjct: 408 PLGRFAVR 415
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 103 bits (247), Expect = 1e-22
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = -1
Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
VLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 432 PLGRFAVR 409
PLGRFAVR
Sbjct: 408 PLGRFAVR 415
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 103 bits (247), Expect = 1e-22
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = -1
Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
VLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 432 PLGRFAVR 409
PLGRFAVR
Sbjct: 408 PLGRFAVR 415
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 103 bits (247), Expect = 1e-22
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = -1
Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
VLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+P
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 407
Query: 432 PLGRFAVR 409
PLGRFAVR
Sbjct: 408 PLGRFAVR 415
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = -1
Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKS-------IKSGDAAIVNLVPSKPLCV 454
VL H+ C+ ++ E++D + K + K +K+G + + + +C+
Sbjct: 341 VLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICI 400
Query: 453 ESFQEFPPLGRFAVR 409
E+F +FP LGRF +R
Sbjct: 401 ENFSDFPQLGRFTLR 415
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -1
Query: 588 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 409
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 609 LDCHTAHI--ACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEF 436
++ H H+ A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F +
Sbjct: 593 VEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKC 651
Query: 435 PPLGRFAVR 409
LGR +R
Sbjct: 652 RALGRAFLR 660
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 609 LDCHTAHI--ACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEF 436
++ H H+ A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F +
Sbjct: 593 VEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKC 651
Query: 435 PPLGRFAVR 409
LGR +R
Sbjct: 652 RALGRAFLR 660
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 430 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 516
G E+L EG + GGN +DN G+T +N F
Sbjct: 365 GMEYLFEGCSSITEGGNSMDNSGVTEYNLF 394
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 494 PPLSTWFPPSPCVW 453
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>02_03_0125 +
15529391-15529495,15530066-15530226,15530315-15530570,
15531360-15531374,15533608-15533967
Length = 298
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 387 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSS 274
RRRC+K L+ R W++ C G+ V + N++
Sbjct: 102 RRRCSKSVALRDLRLWEASTMCALLSVGERVRRSSNTA 139
>10_06_0096 + 10612910-10613132,10613195-10613361
Length = 129
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 486 VNLVPSKPLCVESFQEFPPLGRFAVRXHEAKDGRRRCNKGCELQGS--RWWQSH 331
V ++PS + ++ +PPL + + +DG R + E +GS +W + H
Sbjct: 35 VEVIPSFAVEAAKWKAYPPLNTETIHHAQVRDGYARVSVDREARGSFVQWPKKH 88
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 494 ASPDLMDLGLSSVDLPVRRSTFSL 565
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 569 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSP 447
K+ K +N+ TTL L++ M P+S+W + +P
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSWGSTEAVLMTP 872
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 572 PKSKRKSTVVLVNQQRTTLNPLNLVMP 492
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 277 LSFIYNCDTSFTERCSEGKKGYKLIPFLYFLHGLYCNI 164
L + SF E+C+ GK L+ L+ + +YCN+
Sbjct: 226 LKYALRATKSF-EKCAGGKPSLNLVMSLHVVAAIYCNL 262
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 591 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 430
H+ + EIK+ +R G+ + ++++GD SKP E F P
Sbjct: 638 HVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQ-----TSKPESAEGLNPFAP 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,543,914
Number of Sequences: 37544
Number of extensions: 368890
Number of successful extensions: 1233
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -