Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G09
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   133   1e-33
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   132   3e-33
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    94   8e-22
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.11 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  133 bits (322), Expect = 1e-33
 Identities = 60/68 (88%), Positives = 65/68 (95%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
           VLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+KP+CVE+FQEFP
Sbjct: 360 VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFP 419

Query: 432 PLGRFAVR 409
           PLGRFAVR
Sbjct: 420 PLGRFAVR 427



 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 404 MRQKTVAVGVIKAVNF 357
           MRQ TVAVGVIK+V F
Sbjct: 429 MRQ-TVAVGVIKSVTF 443



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 139 HTPQMFCYNCKLKCKFIE 86
           +TP + C+   + CKF E
Sbjct: 357 YTPVLDCHTAHIACKFAE 374


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  132 bits (319), Expect = 3e-33
 Identities = 59/68 (86%), Positives = 64/68 (94%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 433
           VLDCHTAHIACKFA+IKEK DRR GK+TE+NPKSIKSGDAAIV LVPSKP+C E+FQEFP
Sbjct: 360 VLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFP 419

Query: 432 PLGRFAVR 409
           PLGRFAVR
Sbjct: 420 PLGRFAVR 427



 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -2

Query: 404 MRQKTVAVGVIKAVNF 357
           MRQ TVAVGVIKAV F
Sbjct: 429 MRQ-TVAVGVIKAVTF 443



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 139 HTPQMFCYNCKLKCKFIE 86
           +TP + C+   + CKF +
Sbjct: 357 YTPVLDCHTAHIACKFAD 374


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 94.3 bits (224), Expect = 8e-22
 Identities = 43/49 (87%), Positives = 46/49 (93%)
 Frame = -1

Query: 612 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 466
           VLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+K
Sbjct: 71  VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 139 HTPQMFCYNCKLKCKFIE 86
           +TP + C+   + CKF E
Sbjct: 68  YTPVLDCHTAHIACKFAE 85


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 387 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVN 280
           R RC+   ++ GS+ WQ  +SC    +  E  ++V+
Sbjct: 54  RGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVS 89


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 522 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRXHEAKDGRRRCNKGCEL 358
           NP+    G   +V L PS P C    ++ P LG       +  D     + GC+L
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC----EKNPKLGILGTHGRQCNDTSIGVD-GCDL 115


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 522 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRXHEAKDGRRRCNKGCEL 358
           NP+    G   +V L PS P C    ++ P LG       +  D     + GC+L
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC----EKNPKLGILGTHGRQCNDTSIGVD-GCDL 116


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 557 KSTVVLVNQQRTTLNPLNLVM 495
           KST   V  +R T+NP ++++
Sbjct: 142 KSTTTTVEVKRDTINPEDVIL 162


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = -1

Query: 318 KSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYIFYMAYTVTLFLIYIRLY 139
           +   G+E       S L    +L +  GV K  R  N+F + +  M     L L + +++
Sbjct: 169 RKENGKEFDCHNYMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIW 228

Query: 138 I 136
           +
Sbjct: 229 L 229


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 442 LEGLHTQGLGGNQVDNGGITRFNGFRVV 525
           L  LHT  L  N++   G   FNG  V+
Sbjct: 382 LYNLHTLELSDNKLRTVGAQLFNGLFVL 409


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 297 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 190
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 167 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 202


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 297 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 190
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 162 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,850
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)