Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G08
         (505 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.1  
UniRef50_UPI0000DA4256 Cluster: PREDICTED: hypothetical protein;...    32   6.4  
UniRef50_Q6P2A1 Cluster: Zgc:63970; n=2; Danio rerio|Rep: Zgc:63...    32   6.4  
UniRef50_UPI000023D7A4 Cluster: predicted protein; n=1; Gibberel...    32   8.5  
UniRef50_UPI00015A6520 Cluster: Vacuolar protein sorting-associa...    32   8.5  

>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 189

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  PSRCG*GCPGLRPRRCPSRCASGSRPRKPPR 116
           P+RC   CP   P RCP+RC +    R P R
Sbjct: 12  PARCPARCPARCPARCPARCPARCPARCPAR 42



 Score = 33.9 bits (74), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  PSRCG*GCPGLRPRRCPSRCASGSRPRKPPR 116
           P+RC   CP   P RCP+RC +    R P R
Sbjct: 16  PARCPARCPARCPARCPARCPARCPARCPAR 46



 Score = 33.9 bits (74), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  PSRCG*GCPGLRPRRCPSRCASGSRPRKPPR 116
           P+RC   CP   P RCP+RC +    R P R
Sbjct: 20  PARCPARCPARCPARCPARCPARCPARCPAR 50



 Score = 32.3 bits (70), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 24  PSRCG*GCPGLRPRRCPSRCASGSRPRKP 110
           P+RC   CP   P RCP+RC +    R P
Sbjct: 24  PARCPARCPARCPARCPARCPARCPARCP 52


>UniRef50_UPI0000DA4256 Cluster: PREDICTED: hypothetical protein;
           n=3; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 385

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +3

Query: 81  CASGSRPRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYY-------LVTSHRLMYVH*K 239
           C   +R    P  +  LHTY  ++  TAAT H+ L    Y         T H L+ +H  
Sbjct: 307 CCYSTRTAATPHVLLLLHTYCCYSTLTAATPHLLLLLHTYCCYSTLTAATPHLLLLLHTY 366

Query: 240 IRYNFCTAA-TYLYVLFVT 293
             Y+  TAA  +L +LF T
Sbjct: 367 CCYSTLTAAIPHLLLLFHT 385



 Score = 31.9 bits (69), Expect = 8.5
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +3

Query: 81  CASGSRPRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYY-------LVTSHRLMYVH*K 239
           C   +R    P  +  LHTY  ++  TAAT H+ L    Y         T H L+ +H  
Sbjct: 207 CCYSTRTPATPHLLLLLHTYCCYSTLTAATPHLLLLLHTYCCYSTLTAATPHLLLLLHTY 266

Query: 240 IRYNFCTAAT-YLYVLFVT 293
             Y+  TAAT +L +L  T
Sbjct: 267 CCYSTLTAATPHLLLLLHT 285


>UniRef50_Q6P2A1 Cluster: Zgc:63970; n=2; Danio rerio|Rep: Zgc:63970
           - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 853

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 51  GLRPRRCPSRCASGSRPRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYYLVTSHRLMY 227
           G+RP +CP    S SRP+   +   QLH   +   CT   C  +  RRY+L   H+ M+
Sbjct: 797 GVRPCQCPDCGKSFSRPQS-LKAHQQLHVGTKLFPCT--QCGKSFTRRYHLTRHHQKMH 852


>UniRef50_UPI000023D7A4 Cluster: predicted protein; n=1; Gibberella
           zeae PH-1|Rep: predicted protein - Gibberella zeae PH-1
          Length = 478

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  RPRRCPSRCASGSRPRKPPRQINQLH 134
           RPRR  ++  +GSRPR  PRQI   H
Sbjct: 231 RPRRTTTKQRTGSRPRPRPRQITLRH 256


>UniRef50_UPI00015A6520 Cluster: Vacuolar protein sorting-associated
           protein 13B (Cohen syndrome protein 1).; n=1; Danio
           rerio|Rep: Vacuolar protein sorting-associated protein
           13B (Cohen syndrome protein 1). - Danio rerio
          Length = 1240

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 455 KCMCDVCVCVLFTHIYYLHCRSLVERRSDVTNVLAHVLIKCL 330
           +C+C VCVCV    ++   C  +V+ RSD     A  L  CL
Sbjct: 340 RCVC-VCVCVRERDLHRCVCVRVVQSRSDTLTTAATSLSDCL 380


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,728,270
Number of Sequences: 1657284
Number of extensions: 7840142
Number of successful extensions: 15672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15645
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)