Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G08
         (505 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   0.67 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   2.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   2.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   6.3  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.3  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 247 ITFARRRPTCMYC----LLHL*RHTSPSKYYCKHLISTCASTFVTSLRLSTR 390
           +T  R RP    C    LL L   +SPS  + +HLI     T  T+   +TR
Sbjct: 239 VTSPRARPLARTCRDNRLLVLAGTSSPSNRFTRHLIQRRTHTRHTTTSHNTR 290


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/55 (20%), Positives = 22/55 (40%)
 Frame = -1

Query: 343 LSNVYNNTWRGTCDXXXXXXXTYR*VAAVQKLYLIF*WTYMRRCDVTXXXXRYKF 179
           ++++Y N  R  C         YR    ++K+Y+   W    + + T      K+
Sbjct: 217 VNSLYQNATRKVCGVWKRIPHDYRKRFRMEKIYVALVWGVKDQAEFTLSGQVMKY 271


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 72  PSRCASGSRPRKPPRQINQLHTYIQHNLCTAATCHV 179
           P  CA   R  +PPR I   H  ++      A C V
Sbjct: 105 PDECARACREGEPPR-ICYYHFTLELYTVLGAACQV 139


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 72  PSRCASGSRPRKPPRQINQLHTYIQHNLCTAATCHV 179
           P  CA   R  +PPR I   H  ++      A C V
Sbjct: 105 PDECARACREGEPPR-ICYYHFTLELYTVLGAACQV 139


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 469 AIEHILSSVQRC 504
           A+EHILS V  C
Sbjct: 324 AVEHILSIVNTC 335


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 176 CKLVAALLSCDVT 214
           C  VAAL+ C VT
Sbjct: 44  CTFVAALVYCSVT 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,314
Number of Sequences: 336
Number of extensions: 2167
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)