Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G08
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    29   1.4  
AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    28   3.3  

>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 66  RCPSRCASGSRPRKPPRQINQLHTYIQHNL 155
           R PS+  S S+PR PPR ++ + +  QH++
Sbjct: 586 RAPSQPPSYSQPRPPPRSVSSVSSGNQHSV 615


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 66  RCPSRCASGSRPRKPPRQINQLHTYIQHNL 155
           R PS+  S S+PR PPR ++ + +  QH++
Sbjct: 586 RAPSQPPSYSQPRPPPRSVSSVSSGNQHSV 615


>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 FARRRPTCMYCLLHL*RHTSPSKYYCKHLISTCAST 360
           FA RRPTC  C +   + ++ +K   +   +TC+ T
Sbjct: 44  FASRRPTCCACWMRRKKESTTTKVCVQDDCTTCSCT 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,341,508
Number of Sequences: 27780
Number of extensions: 203108
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)