Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G07
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    67   1e-12
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    29   0.39 
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    29   0.52 
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    28   0.69 
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    26   2.8  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   2.8  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   2.8  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   3.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   4.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   6.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   8.4  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   8.4  

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 28/57 (49%), Positives = 43/57 (75%)
 Frame = +3

Query: 6   RAERSFKWRNCALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKERKPDCISHIKNLK 176
           R+ +S ++  CA++ +PL  P+VSCGLG+LY+K+S+L+ LLD+   P   SHIK+LK
Sbjct: 30  RSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPSHIKSLK 86


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 257 VNENLVKMLPHFQSVIYLYYTFIFDRSFIVETWF 358
           VN +LV+ +P F   I+   T  +DR  ++  WF
Sbjct: 440 VNSHLVEAVPKFSKFIHGVSTLFYDRVTLLPYWF 473


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 36  CALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKERKPDCISHIKNLKVTLLKKSL 200
           C L+ QP+  P++S      Y K ++L  L      P C+  +   +  L +  L
Sbjct: 179 CPLTLQPIVHPILSTACNHFYEKDAILSLL-----NPTCVCPVVGCEARLQRSLL 228


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = -1

Query: 250 HLLSIIASLLSKNMIIFKDFFNNVTLRFLMWLMQSGFLSLSSKASR 113
           H+ S++A+  SKN+ +  D F+NV  + L  L+ S  +S+ SK S+
Sbjct: 252 HISSLVAAK-SKNLRLSLDMFSNVNNQLLSHLVTSS-ISIVSKPSK 295


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 33  NCALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKERKP-DCISHIKNLKVTL 185
           N   S  P   P +  G+  LY+K  +L++  D E+K    +S I+  KV L
Sbjct: 115 NTFSSSNPKSRPTLPPGI--LYAKLKLLDSFSDSEKKRLSLVSFIQTKKVPL 164


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 133 LSSKASRTELLLYSLPRPQDTTGSCSGC*DNAQLRHLKER 14
           +SSKA+ T  L  S   P     S  GC +N QL  L ++
Sbjct: 105 ISSKATGTGALASSSSAPVKGFASLQGCIENPQLECLNQQ 144


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 36  CALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKERKP 146
           C++S +  +EPV+S   G +Y K  + + + +  + P
Sbjct: 3   CSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDP 39


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -1

Query: 286 RKHFDKIFIYFTHLLSII------ASLLSKNM-IIFKDFFNNVTLRFLMW 158
           R+ F++ F YF+H +S +       +  SK + II +DF  N T  +L W
Sbjct: 254 REQFERCFAYFSHDISNVPRDWNKVTNYSKRLGIIPQDFEPNCTNGYLTW 303


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 487 LQRLGF*SVLGL*YPRNL*Y*QIAVLMNNIYNSFS 383
           +QR+GF  V    YP +L Y Q  VL ++I +++S
Sbjct: 483 VQRVGFCGVPAEPYPSSLYYLQPGVLRSSIESAYS 517


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 235 IASLLSKNMIIFKDFFNNVTLRFLMWLMQSGFLSLSSKASRTE 107
           + S +S+ + I+KD    +T R L  L+   F SLS+    T+
Sbjct: 757 VLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTD 799


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 284 PHFQSVIYLYYTFIFDRSFIVE 349
           P FQ++ YL+  + + R FI+E
Sbjct: 449 PLFQTLQYLFRLYPYQRDFIIE 470


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 205 IFKDFFNNVTLRFLMWLMQSGFLS 134
           +FK FFN++   F +W+     LS
Sbjct: 133 VFKSFFNSMPKEFEVWMSHGDRLS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,541
Number of Sequences: 5004
Number of extensions: 40117
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)