Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G07
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0585 - 4200230-4201282 49 2e-06
04_02_0006 + 8455219-8457469,8457560-8457924 29 2.1
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 29 2.8
01_06_0794 + 32050413-32050523,32050663-32051391 28 3.7
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 28 4.8
04_01_0229 - 2897484-2900402 28 4.8
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553... 27 8.5
07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561... 27 8.5
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 27 8.5
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591... 27 8.5
>06_01_0585 - 4200230-4201282
Length = 350
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3
Query: 36 CALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKERKPDCISHIKNLK 176
CALS +PL P V+ LG L++K +++EALL K R P +SHI+ LK
Sbjct: 124 CALSGEPLAAPAVADRLGNLFNKEALVEALLHK-RLPKALSHIRGLK 169
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 245 QMCEVNENLVK-MLPHFQSVIYLYYTFIFDRSFIVETWFFFCLVTN 379
QM +++ NL+ ++P S+I L F+ + E W FF +TN
Sbjct: 126 QMLDLSSNLLSGLVPALGSLINLNKLFLGNNRLEAEDWSFFTALTN 171
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 87 GRLYSKSSVLEALLDKERKPDCISHIKNLKV 179
GR+ + S + LD+ R PDC+S + N+ V
Sbjct: 353 GRVSACSGDGDIALDEPRPPDCVSEVANVNV 383
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 3 TRAERSFKWRNCALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKERKPDC 152
T A + +C + PL+ PV+ CG+G + SS L DK R C
Sbjct: 13 TNATVDLEVLDCTVCCHPLKPPVLQCGVGHVIC-SSCHGKLPDKNRCHVC 61
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 27.9 bits (59), Expect = 4.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 308 LYYTFIFDRSFIVETWFFFCL 370
L Y F++ ++ ++ TW+ FC+
Sbjct: 244 LMYDFLYTKAAVIHTWYGFCI 264
>04_01_0229 - 2897484-2900402
Length = 972
Score = 27.9 bits (59), Expect = 4.8
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 290 FQSVIYLYYTFIFDRSFIVETWFFFCL 370
FQ + L Y ++ ++ ++ TW+ +CL
Sbjct: 259 FQMEVSLLYDIMYTKAGVIHTWYGYCL 285
>11_04_0057 -
12953479-12954364,12954484-12955034,12955125-12955342,
12957514-12957678,12960562-12960898
Length = 718
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 291 FSQ*FTYTILLYLIDRLLWKLGF 359
F+Q TIL+Y D++ WK+GF
Sbjct: 328 FAQIVAVTILVYFQDQVGWKVGF 350
>07_01_0737 +
5614552-5616196,5617425-5617600,5617811-5617930,
5618589-5618669,5618769-5618804,5618872-5618922,
5618923-5618988,5620755-5620976,5622147-5622308,
5622321-5622491
Length = 909
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 120 ALLDKERKPDCISHIKNLKVTLLKKSLNIIIFLESSEAIMLNKC 251
+LL P+ I H K + +LKK L F+ S+ M +KC
Sbjct: 221 SLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKC 264
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 120 ALLDKERKPDCISHIKNLKVTLLKKSLNIIIFLESSEAIMLNKC 251
+LL P+ I H K + +LKK L F+ S+ M +KC
Sbjct: 532 SLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKC 575
>01_01_0764 +
5910687-5910961,5912549-5912636,5912750-5912909,
5913017-5913237,5913315-5913610,5914176-5914287,
5914376-5914514,5914850-5915046,5915134-5915223,
5915611-5915646
Length = 537
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 202 FKDFFNNVTLRFLMWLMQSGFLSLSSKASRTELLLYSLP 86
FK+ FNN F++ L+ GF+ + K +LL+ P
Sbjct: 292 FKNGFNNFNFAFILALLFLGFVPFARKKYVPDLLIVVSP 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,115
Number of Sequences: 37544
Number of extensions: 201067
Number of successful extensions: 478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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