Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G07
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    31   0.36 
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        29   1.9  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    29   1.9  
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    28   4.4  
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical
           protein C01A2.5 protein.
          Length = 300

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +3

Query: 24  KWRNCALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKE-RKPDCISHIKNLK-VTLLKKS 197
           KWRNC L+Q PL+ PV++C  G+LY+K  V+ ++L K   K    SHIK  K    LK +
Sbjct: 33  KWRNCQLTQLPLKRPVIACRFGKLYNKEDVINSILSKTISKSASASHIKGPKDFVELKLT 92

Query: 198 LN 203
           LN
Sbjct: 93  LN 94


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 259 YFTHLLSIIASLLSKNMIIFKDFFNNVTLRFLMWL 155
           Y T L   + +LL  N+IIF   F  + ++ L WL
Sbjct: 120 YVTMLFPCLVALLRLNLIIFPSDFQKINIKILRWL 154


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +3

Query: 36   CALSQQPLQEP-----VVSCGLGRLYSKSSVLEALLDKERKPDCISHIKNLKVTLLKKSL 200
            C ++ +  Q P     +V C +G     SS++ A  D +R PD  S   +    L + +L
Sbjct: 1524 CRIASEKTQNPNVKKHLVGCAMGVASKTSSLVTAFKDLDRMPDAESRCTSSASELRQVAL 1583

Query: 201  NIIIFLESSE 230
             ++ F +  +
Sbjct: 1584 QLLHFADKPD 1593


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +3

Query: 36   CALSQQPLQEP-----VVSCGLGRLYSKSSVLEALLDKERKPDCISHIKNLKVTLLKKSL 200
            C ++ +  Q P     +V C +G     SS++ A  D +R PD  S   +    L + +L
Sbjct: 1524 CRIASEKTQNPNVKKHLVGCAMGVASKTSSLVTAFKDLDRMPDAESRCTSSASELRQVAL 1583

Query: 201  NIIIFLESSE 230
             ++ F +  +
Sbjct: 1584 QLLHFADKPD 1593


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 259 YFTHLLSIIASLLSKNMIIFKDFFNNVTLRFLMWL 155
           Y T L   + +LL  N IIF   +  +  R L WL
Sbjct: 120 YATMLFPCLVALLRLNSIIFPSNYQKINARILDWL 154


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +3

Query: 36  CALSQQPLQEPVVSCGLGRLYSKSSVLEALLDKER 140
           C+L+ QP + PV+S   G ++ + ++LE +L +++
Sbjct: 46  CSLTLQPCRNPVIS-PTGYIFDREAILENILAQKK 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,806,923
Number of Sequences: 27780
Number of extensions: 214873
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)