Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G06
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.0  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   3.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 334  LRGSTAIPIVLAKEGFNPEALISRRVNP 251
            LRG TA  I++  E   PE  + R + P
Sbjct: 1153 LRGRTAQLIIVQAENAYPEVELDRELRP 1180


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 554 EVLLIFSDGSSNRFWCCLLYWHQGTTQLSSQFALFFIS--FTLQYLLALREKN 402
           E L I+  G   R     LY+ Q   ++S+ F LF+ +  F + +  AL  KN
Sbjct: 81  EFLSIYKHGMLPRGELFSLYYPQLLREMSALFKLFYHAKDFDIFFKTALWAKN 133


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 554 EVLLIFSDGSSNRFWCCLLYWHQGTTQLSSQFALFFIS--FTLQYLLALREKN 402
           E L I+  G   R     LY+ Q   ++S+ F LF+ +  F + +  AL  KN
Sbjct: 81  EFLSIYKHGMLPRGELFSLYYPQLLREMSALFKLFYHAKDFDIFFKTALWAKN 133


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 149 YSILLSTMTTSWLIKPCLH 93
           YSILLS + T  +  P +H
Sbjct: 3   YSILLSLLITCLICSPSVH 21


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 477 RGPLMPVQQTAPKSVA 524
           RG  +PV+ TAP+++A
Sbjct: 796 RGGKIPVRWTAPEAIA 811


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 351 ESLQINVQRLKEYRARLILFPKGKKVLKGE 440
           +S +IN++R+K+   +L  +      LKGE
Sbjct: 492 KSSRINIERMKQVYQQLNKYRGNGVSLKGE 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,426
Number of Sequences: 438
Number of extensions: 3204
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)