Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G04
         (567 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q94901 Cluster: RNA-binding protein lark; n=8; Endopter...    39   0.094
UniRef50_Q4P3H0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q4AHP3 Cluster: TPR repeat:TPR repeat; n=1; Chlorobium ...    32   8.1  
UniRef50_A4ALU8 Cluster: Naphthoate synthase; n=1; marine actino...    32   8.1  

>UniRef50_Q94901 Cluster: RNA-binding protein lark; n=8;
           Endopterygota|Rep: RNA-binding protein lark - Drosophila
           melanogaster (Fruit fly)
          Length = 352

 Score = 38.7 bits (86), Expect = 0.094
 Identities = 31/90 (34%), Positives = 37/90 (41%)
 Frame = +3

Query: 156 YDGYYDRARFDSPRDLFERRYPVAGSRGLDMGASRGARGEFVXXXXXXXXXXXXXXXXXX 335
           YD YYDR RF+  RDL+ERRY  +  R            +F                   
Sbjct: 236 YD-YYDR-RFEDSRDLYERRYQTSRMR------------DFPPPPISRREPMPLPPTLSG 281

Query: 336 XXXXXXXXXXYDVMFNRRSPPPGPQMSRGM 425
                     YD MF+RRSPPP P+ S GM
Sbjct: 282 SLRSCSVSRGYDTMFSRRSPPP-PRSSNGM 310


>UniRef50_Q4P3H0 Cluster: Putative uncharacterized protein; n=1;
            Ustilago maydis|Rep: Putative uncharacterized protein -
            Ustilago maydis (Smut fungus)
          Length = 2195

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -3

Query: 280  TNSPRAPRDA-PISSPRDPATGYRR---SNRSRGESNLARS*YPSYG 152
            T+S R+PR A P SSPR+P++ ++R   S+R    S+ AR   P  G
Sbjct: 959  TDSRRSPRQASPGSSPREPSSPFKREVGSSREPSPSSRARQAQPPQG 1005


>UniRef50_Q4AHP3 Cluster: TPR repeat:TPR repeat; n=1; Chlorobium
           phaeobacteroides BS1|Rep: TPR repeat:TPR repeat -
           Chlorobium phaeobacteroides BS1
          Length = 447

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 532 VRVSESYHNISSSQCLIYASAFYLLSSNVS 443
           V +SESY N+S ++C+ Y    Y L+ N++
Sbjct: 24  VSLSESYRNVSFNECIKYGQQAYKLAKNIN 53


>UniRef50_A4ALU8 Cluster: Naphthoate synthase; n=1; marine
           actinobacterium PHSC20C1|Rep: Naphthoate synthase -
           marine actinobacterium PHSC20C1
          Length = 274

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 109 KLCFRPNELLYDDRIRTMGTMTVQGSTRHVICSSGDTRWRDRGG 240
           +LC    +  +D  I   G + + G+     C+ GD +W D GG
Sbjct: 40  ELCLAIQDASFDAEI---GVVVITGAGDRAFCAGGDVKWEDEGG 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,235,319
Number of Sequences: 1657284
Number of extensions: 9035571
Number of successful extensions: 21135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21123
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)