Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G04
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0730 - 20472851-20473075,20473332-20474285 33 0.21
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 29 2.0
07_03_1186 + 24660874-24661218,24661310-24661915 28 4.5
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 28 6.0
03_01_0244 - 1900492-1901109,1901416-1902345 28 6.0
01_01_0674 + 5162291-5162376,5162530-5162560,5162689-5163207,516... 28 6.0
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 27 7.9
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 27 7.9
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 27 7.9
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 444 HG*NLHTSPGTFEVLAEDSFG*TLHHRRISWIPS 343
H ++H S T V+ D+ G TLHH ++W PS
Sbjct: 282 HRYDIHHSRATRTVVLTDTLGYTLHHAYMAWTPS 315
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 271 PRAPRDAPI--SSPRDPATGYRRSNRSRGESNLARS*YPSYGSCHHTT 134
P+A R PI S+ P + Y+ S R+ + A S +PS GS H T
Sbjct: 105 PQAERPDPIGRSASPSPCSSYQPSPRASYNPSPASSSFPSSGSSSHIT 152
>07_03_1186 + 24660874-24661218,24661310-24661915
Length = 316
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 476 ICFLPSIIKCVTAKIFIHPPGHLRSWRRTPSVEHYIIGG 360
+ LP I V + +HPPG L SW R +V +GG
Sbjct: 166 VASLPYIQSIVKETLRMHPPGPLLSWARL-AVHDARVGG 203
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -2
Query: 467 LPSIIKCVTAKIFIHPPGHLRSWRRTPSVEHYIIGGSHGS 348
L +++ K + P H+R W + H + GG +GS
Sbjct: 719 LQVLLQPAEVKELVAIPNHMRFWGLDSGIRHSVGGGDYGS 758
>03_01_0244 - 1900492-1901109,1901416-1902345
Length = 515
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 467 LPSIIKCVTAKIFIHPPGHLRSWRRTPSVEHYIIG 363
LP + + + +HPPG L SWR + Y+ G
Sbjct: 363 LPYLQALLKEALRMHPPGPLLSWRHRAISDTYVDG 397
>01_01_0674 +
5162291-5162376,5162530-5162560,5162689-5163207,
5165561-5166010,5166050-5166134,5167374-5167399
Length = 398
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = -3
Query: 262 PRDAPISSPRDPA-TGYRRSNRSRGESNLARS*YPSYGSCHHTTTHLV*SIVFTQHKITT 86
P + ++P PA TG S +R +L P G+C S++ H T
Sbjct: 99 PESSAAAAPELPAATGGAFSRYAR---HLRPRRPPKPGACGQRMFKTAMSVLANMHVAAT 155
Query: 85 YYRFVYTHRVSGASQYVASPSP 20
Y R Y + + A+ A+P+P
Sbjct: 156 YRRQYYYQQAAAAAAAEAAPAP 177
>06_03_1318 -
29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 32 CYILARAAYSMRINESIICCYFMLGENY-ALDQMSCC 139
C ++ R ++++ E +ICC+ + Y L+ +S C
Sbjct: 862 CNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYC 898
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 268 RAPRDAPISSPRDPATGYRRSNRSRGESNLARS*YPSYGSCHHTTTHLV 122
RA + A + +PR P+T RR+ ++G +++ + PS G T V
Sbjct: 352 RARKQADVDTPRRPSTSERRA-VNKGSADMTTTHRPSTGERRSVTRESV 399
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -3
Query: 238 PRDPATG--YRRSNRSRGESNLARS*YPSYGSCHHTTTHLV*SIVFTQHKITTYYRFVYT 65
P P TG +RR R G P G+C S + H TTY R Y
Sbjct: 158 PPPPVTGGAFRRYARHLGPRRA-----PKPGACGQRMFKTAMSALAKMHMETTYRRRQYY 212
Query: 64 HRVSGASQYVASPSPA 17
++ + A+ A P P+
Sbjct: 213 YQQAAAAAEAAPPPPS 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,135
Number of Sequences: 37544
Number of extensions: 256961
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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