Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G03
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 30 1.5
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 29 2.6
11_06_0285 - 21914563-21914707,21914954-21915078,21915215-219153... 29 3.4
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.4
08_02_0718 + 20382323-20385046 28 4.5
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 28 6.0
10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448... 27 7.9
07_03_0001 + 12219741-12219927,12219976-12220955 27 7.9
04_03_0634 - 18211054-18212169,18213449-18214219 27 7.9
04_03_0610 - 17972032-17972835 27 7.9
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Frame = +2
Query: 164 DDIVM--VYSKVKHSTSYPETCVKDNKEVQE-LDLTGSPLKL---DLSLHT-------IL 304
DD+V+ + K K S + K V E D+ GSP ++ S H+ ++
Sbjct: 584 DDVVLASLVHKSKSSKTKASKIHSSPKNVDESCDMDGSPEEVVSKSFSNHSGRKRVRVVI 643
Query: 305 DETFASDEPQMWNKEEVLHGPI-SIDTAREIANIYNKNRNE 424
+ A + P++ + L G S+ T+ IAN N+NRN+
Sbjct: 644 SDDEAEEAPEIDQSKRTLTGRADSLSTSERIANAANRNRNQ 684
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 185 SKVKHSTSYPE-TCVKDNKEVQELDLTGSPLKLDLSLHTILDETFASDEPQMWNKEEVLH 361
SK+ ST + +C D +++ + S + ++ + A + P++ + L
Sbjct: 553 SKMHSSTKNVDGSCGMDESPEEDVSKSFSNHYGRKRVRVVISDDEAEEAPEIDQSKRTLT 612
Query: 362 GPI-SIDTAREIANIYNKNRNE 424
G S+ T+ IAN N+NRN+
Sbjct: 613 GRADSLSTSERIANTANRNRNQ 634
>11_06_0285 -
21914563-21914707,21914954-21915078,21915215-21915382,
21917184-21917475,21917927-21918096
Length = 299
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +2
Query: 218 TCVKDNKEVQELDLTGSPLKLDLSLHTILDETFASDEPQMWNKEEVLHGPISIDTAREIA 397
TCV +N +Q LD+ T +D AS + + + +HG I + T
Sbjct: 228 TCVSNNPSLQFLDIVDRA-------KTTID---ASKQRGETTRIDQMHGSIRLKTTSVFL 277
Query: 398 NIYNKNRNEVVENVPALWIL 457
Y + N+ V+ V A WI+
Sbjct: 278 ESYRWHFNQKVQTVCAWWIM 297
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 152 TKCSDDIVMVYSKVKHSTSYPETCVKDNKEVQELDLTGSPLKLD 283
+ C+DD ++ S++K S PE+ + Q+ D+ +P ++D
Sbjct: 334 SSCTDDSLIESSEIKDSDDIPESSDVKTELTQKTDMDENPGRMD 377
>08_02_0718 + 20382323-20385046
Length = 907
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 236 KEVQELDLTGSPLKLDLSLHTILDETFASDEPQMWNKEEVLHGPISIDTAREIANIYNK 412
K+VQ L +KL LSL T D+ A P + ++ +S+D A+ I Y K
Sbjct: 109 KQVQSLSARIDTIKLRLSLLTNFDDKEAPANPTRYQLDDRQLDMLSLDEAKVIGIGYPK 167
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 137 YVEMYTKCSDDIVMVYSKVKHSTSYPETCVKDNKEVQELDLTGSPLKLD 283
Y EMY + DD +S++ + + D + LD+T P+K++
Sbjct: 221 YQEMYRRSIDDPAGFWSEIAETFYWKHKWNPDEVCTENLDVTKGPIKIE 269
>10_02_0041 +
4486623-4486855,4487002-4487036,4487132-4487253,
4487496-4487585,4487711-4487830,4487941-4488024,
4488123-4488200,4488349-4488474,4488564-4488653,
4489183-4489218,4489294-4489349,4489569-4489716,
4489797-4490130,4491249-4491384,4491595-4491636,
4491725-4491893,4492471-4492554,4492660-4492755
Length = 692
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = +2
Query: 104 KYYIEKQKCPSYVEMYTKCSDDIVMVYSK-------VKHSTSYPETCVKDN-KEVQELDL 259
K YI++ S + + + + +YSK V ST ET +D KE +
Sbjct: 408 KRYIDRYSATSVIGFRAEDLNHVADLYSKAQANWSSVLRSTCPVETSSQDELKECANKEC 467
Query: 260 TGSPLKLDLSLHTILDETFASDEPQMWNK 346
T S L+L + ++ E+FA W +
Sbjct: 468 TSSALRLQIDAYSDFLESFAKLARSAWTE 496
>07_03_0001 + 12219741-12219927,12219976-12220955
Length = 388
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 363 PCNTSSLFHICGSSD 319
PC TS++FHI G SD
Sbjct: 165 PCPTSAIFHIFGESD 179
>04_03_0634 - 18211054-18212169,18213449-18214219
Length = 628
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 131 PSYVEMYTKCSDDIVMVYSKVKHSTSYPET 220
P +VE+ K DD+ + S ++ T YP T
Sbjct: 594 PMHVELTDKAEDDVRTIVSWLQKRTCYPRT 623
>04_03_0610 - 17972032-17972835
Length = 267
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 77 LPPGLENYGKYYIEKQKCPSYVEMYTKCSDDIVMVYSKVKHSTSY 211
+P GL+NYG ++ ++ M ++CS ++ S STSY
Sbjct: 141 IPKGLQNYGIWFDDRFNTAKIYNM-SRCSYAALVEASNFTFSTSY 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,667
Number of Sequences: 37544
Number of extensions: 303577
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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