Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G03
         (568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   2.3  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   5.3  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   5.3  

>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 291 RLRSNLRGEPVRSNSWTSLLSFTQVSG*LVECLTLEYTITI 169
           RLR N  GEP+      ++ SF  +S      + ++YTIT+
Sbjct: 11  RLRPNFGGEPLHVGMDLTIASFDAISE-----VNMDYTITM 46


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 425 VVENVPALWILVKPADISKPLLLMVRPDKSHFSRGIVTYE 544
           V+E     W  +KP DI K  L+        F+ G +TY+
Sbjct: 831 VIERQQGRWKALKPFDIEKSSLI------HFFTHGFLTYD 864


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 425 VVENVPALWILVKPADISKPLLLMVRPDKSHFSRGIVTYE 544
           V+E     W  +KP DI K  L+        F+ G +TY+
Sbjct: 832 VIERQQGRWKALKPFDIEKSSLI------HFFTHGFLTYD 865


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,438
Number of Sequences: 2352
Number of extensions: 14250
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)