Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G03
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U50191-4|AAK31553.1|  194|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    29   3.1  
AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical ...    29   3.1  
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    27   7.1  
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    27   7.1  
Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear recep...    27   9.4  
AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear horm...    27   9.4  

>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -3

Query: 158 ILYTFRHNLDIFVSQYNICH 99
           ILY FR NL IF S  N CH
Sbjct: 16  ILYEFRKNLPIFESFKNFCH 35


>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
           protein F56C9.10b protein.
          Length = 1031

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
 Frame = +2

Query: 263 GSPLKLDLSLHTILDETFASDEPQMWNKEEVLHGPISIDTAREI-ANIYNKNRNEVVENV 439
           G P K +   H    +     +PQ   +EE    PI  D   E+   +  KNR E  E V
Sbjct: 9   GGPKKKNKKNHQRPQQQHQQTQPQPLPEEEQPENPIKKDPKPEVLEEVVEKNREEDKEKV 68

Query: 440 --PALWILVKPADISKPLLLMVRPDKSHFS 523
                  + K  +IS  LL     DKS  S
Sbjct: 69  EETVAPTIEKEKNISGDLLDFSSSDKSSLS 98


>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
           protein F56C9.10a protein.
          Length = 1028

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
 Frame = +2

Query: 263 GSPLKLDLSLHTILDETFASDEPQMWNKEEVLHGPISIDTAREI-ANIYNKNRNEVVENV 439
           G P K +   H    +     +PQ   +EE    PI  D   E+   +  KNR E  E V
Sbjct: 9   GGPKKKNKKNHQRPQQQHQQTQPQPLPEEEQPENPIKKDPKPEVLEEVVEKNREEDKEKV 68

Query: 440 --PALWILVKPADISKPLLLMVRPDKSHFS 523
                  + K  +IS  LL     DKS  S
Sbjct: 69  EETVAPTIEKEKNISGDLLDFSSSDKSSLS 98


>U50191-4|AAK31553.1|  194|Caenorhabditis elegans Hypothetical
           protein T14B4.5 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 527 PLKSEIYLVLPSIIMA*IYLQVLPVSTRQEHFPQLHSCFYCIYWLFLL 384
           P K+   L   S ++  I   + PV  +Q  F  LH  FYC +  F++
Sbjct: 112 PGKTTWQLFNTSAVVGLICGFIRPVQMQQRLFSSLHEGFYCYFMFFII 159


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 264 VLLLNWISACIPFWMKPLHLMNHRCGIRKK 353
           + ++ W   C+PF++  L  +NH C   KK
Sbjct: 81  LFIIPWCFCCVPFFLDQLLDVNHSCPACKK 110


>AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.13 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 155 KCSDDIVMVYSKVKHSTSYPETCVKDNKEVQELDLTGSPLKL 280
           +C D + M+YS V  +   P + +KD KE+  +  +   L L
Sbjct: 215 RCDDLVAMIYSIVYLTLGLPWSNLKDEKEIMSMKKSTKDLAL 256


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 335 MWNKEEVLHGPISIDTAREIANIYNKNRNEVVENVPALWILV 460
           +W   +   G    D  R+I  I  K  NE+ E   +LWILV
Sbjct: 31  LWANLDKNFGSHLSDFVRQIEGIDQKLVNEIAEYQASLWILV 72


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 484 WLRYICRFYQYPQGRNIFHNFIPVFIVYIGY 392
           W  ++  F Q P+  +IFH F P+F+ ++ +
Sbjct: 243 WSNFLPIFSQLPRIFSIFHRFPPIFMDFMPF 273


>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 310 FIQNGMQAEIQFKRRTSQI*LLDFFVVFYA---SFWITC 203
           F+ N     +  +   S   ++ F+++FYA   +FW+TC
Sbjct: 32  FLYNKKNGTVMGRTGKSWFQIIVFYIIFYAFLAAFWLTC 70


>AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear receptor
           NHR-126 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 74  LLPPGLENYGKYYIEKQKCPSY 139
           LL    +N  KYY+EK K P+Y
Sbjct: 336 LLEAQADNLHKYYVEKLKMPNY 357


>AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 126 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 74  LLPPGLENYGKYYIEKQKCPSY 139
           LL    +N  KYY+EK K P+Y
Sbjct: 336 LLEAQADNLHKYYVEKLKMPNY 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,766,859
Number of Sequences: 27780
Number of extensions: 301337
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)