Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G02
         (587 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FHE9 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  
UniRef50_A0CIJ6 Cluster: Chromosome undetermined scaffold_19, wh...    33   4.9  
UniRef50_Q89AZ5 Cluster: Flagellar hook-length control protein; ...    33   6.5  
UniRef50_Q2V885 Cluster: Forkhead transcription factor O; n=2; S...    32   8.6  

>UniRef50_A2FHE9 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1738

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 23/91 (25%), Positives = 43/91 (47%)
 Frame = -2

Query: 544  NYKAYVCANVGPYIVRFTNNTTLSSQYKLYPIV*EKRLELNNT*KTCTFTMNSDYLGNIY 365
            N  +Y+    G +I    +N+TLS   K   +  +  L LNN     TF +NS   GN++
Sbjct: 1525 NILSYLMTQFGRFI-SVDSNSTLSLMKKCIDLCDDCELLLNNAVLCVTFLINS---GNVF 1580

Query: 364  LIIFLLPIGAVCQKTLKYCLSSYSSIFSNRV 272
              + ++ +  VC K +  C     ++ ++ +
Sbjct: 1581 EAVCIVEL--VCSKNVDTCAKDAKTVLASMI 1609


>UniRef50_A0CIJ6 Cluster: Chromosome undetermined scaffold_19, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_19, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3126

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 364  GKYCLSNHYSL*RCKFFKYYLVQVVFLKLWDIIYIVMKV 480
            G +  S  YS   C    Y LVQ++   +W +I IV+ V
Sbjct: 2658 GSFSTSQQYSCGSCDNVSYNLVQIIGFSIWSLITIVLSV 2696


>UniRef50_Q89AZ5 Cluster: Flagellar hook-length control protein;
           n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
           Flagellar hook-length control protein - Buchnera
           aphidicola subsp. Baizongia pistaciae
          Length = 356

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -2

Query: 496 FTNNTTLSSQYKLYP-IV*EKRLE-LNNT*KTCTFTMNSDYLGNIYLIIFLLPIGAVCQK 323
           F     LS  YK +   V +K L  LNN  K  TF +NS +LG++++   ++   ++   
Sbjct: 203 FKKKFILSCDYKFWKKFVFKKMLVFLNNKTKCITFILNSKHLGSVFIYFKIINNKSII-L 261

Query: 322 TLKYCLSSYSSIFSNRVIKKK 260
            L  C +    IF + +I  K
Sbjct: 262 DLVTCRNEIKKIFQSHIIYLK 282


>UniRef50_Q2V885 Cluster: Forkhead transcription factor O; n=2;
           Strongylocentrotus purpuratus|Rep: Forkhead
           transcription factor O - Strongylocentrotus purpuratus
           (Purple sea urchin)
          Length = 476

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 555 NTDRITRHMYVQTLDPTLFVSPTIQHFHHNINYI 454
           +TD++ +     TLD +L V P I+H H+N  Y+
Sbjct: 296 STDQLAKLAKAMTLDSSLSVEPAIRHTHNNGGYL 329


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,217,652
Number of Sequences: 1657284
Number of extensions: 8820929
Number of successful extensions: 17040
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17038
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)