Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G02
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   1.5  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   4.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.2  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 346 PIGAVCQKTLKYCLSSYSSIFSNRVI 269
           P GA CQK  K+ +    S++ NRV+
Sbjct: 569 PCGANCQKCTKHYVLENDSLYKNRVL 594


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 391 NSDYLGNIYLIIFLLPIGAVCQKTLKYCLSSYSSIFSNRV 272
           +SD+L  +  +  +   G V   T KYCL  Y  I  NRV
Sbjct: 338 SSDHLNQMTYVFAIEANGYVKDVTRKYCL-HYYKILKNRV 376


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 234 NKVNITYE*MIYLIWSHFNDSESI 163
           +K  + Y  +IY IW+H  D +S+
Sbjct: 722 SKEELLYVCLIYTIWTHCTDMDSM 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,038
Number of Sequences: 5004
Number of extensions: 42781
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)