Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G01
         (396 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6CPB5 Cluster: Sensor protein; n=1; Bacillus sp. SG-1|...    32   3.5  
UniRef50_Q4N4G5 Cluster: Putative uncharacterized protein; n=2; ...    31   6.1  

>UniRef50_A6CPB5 Cluster: Sensor protein; n=1; Bacillus sp.
           SG-1|Rep: Sensor protein - Bacillus sp. SG-1
          Length = 412

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 316 NSVPNIHLSRSLREARKRFIKLWTFFFLVA*QIYYYY 206
           N + NI L R      K F+ L+ +FFL+A  ++YYY
Sbjct: 2   NQLNNIRLDREEIRTLKLFLSLF-YFFLIAYDVFYYY 37


>UniRef50_Q4N4G5 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1008

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 257 YKPFTSFT-KRSA*MYIRHRVI*NKVIVVRYYTHIHISV*NQLLYTI 394
           YK  TS+T K+SA ++   R++  K++  R+Y H  +S+    LY++
Sbjct: 849 YKLRTSYTEKKSASIHSERRLLLRKILAFRHYLHSRLSLLLSSLYSL 895


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,053,506
Number of Sequences: 1657284
Number of extensions: 6788535
Number of successful extensions: 13394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13390
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)