Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G01
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   5.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   5.6  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   5.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   7.4  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 14  IEIYQLWHLGILTYLGITTICAFRGYV---QTPYWIHPP 121
           +++   W   +LT L + T+  + GYV   + P W+  P
Sbjct: 66  VQVEGPWQFYVLTTLPLRTLSRWWGYVNRIEIPLWMRVP 104


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 349 IISYNYYFISNNSVPNIHLSRSLREARKRF 260
           ++S   YF+ NN   N+H+   L++ +++F
Sbjct: 499 LLSSFLYFLINNFNDNLHIIELLQKDKRKF 528


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 32  WHLGILTYLGITTICA 79
           W LG  TY G+ T CA
Sbjct: 218 WSLGFETYYGVLTKCA 233


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 301 IHLSRSLREARKRFIKL 251
           IHL R L++ R+RF K+
Sbjct: 611 IHLERCLKDLRERFAKI 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,628
Number of Sequences: 5004
Number of extensions: 31521
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)