Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G01
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   5.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 368 QIYVYGYNIVQLLLYFK 318
           +I  YGY ++ +++Y+K
Sbjct: 178 EIESYGYTVLDVVMYWK 194


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 92  HNL*MRKWLLYLNMLIYLDATIDKSQ*NPR 3
           H      W+L   + +YL  +ID S+ N R
Sbjct: 491 HEYDQNVWVLSNKLAMYLYGSIDSSKINYR 520


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 107 WIHPPFCSTRDASTTSQTYFIFS 175
           W+ P +   R   T SQT  I+S
Sbjct: 344 WLDPEYPMIRVHKTQSQTIDIYS 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,792
Number of Sequences: 438
Number of extensions: 2376
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)