Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F24
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CR11 Cluster: Similarity; n=2; Kluyveromyces lactis|R...    34   2.6  
UniRef50_Q550J2 Cluster: Putative uncharacterized protein; n=4; ...    33   6.0  

>UniRef50_Q6CR11 Cluster: Similarity; n=2; Kluyveromyces lactis|Rep:
           Similarity - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 1367

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 306 ELLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKPNRAXXXXXXX 485
           E +D+DI +++  L +   S++PKI+ +R L H D + + Y P+  ++  N         
Sbjct: 255 EDIDIDIPSSQTQLTQQHNSSSPKIQPSRRLRHRDPNQNYYIPTLSQMDENPHLLQESLL 314

Query: 486 XXXXXTCKQENIFSN 530
                T    NI  N
Sbjct: 315 SKRRTTSTNNNIHHN 329


>UniRef50_Q550J2 Cluster: Putative uncharacterized protein; n=4;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 634

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 201 RPEGSVTDVIGECSCGRTKLSGKGAMMASIFINCV 97
           +P G+   V GEC C  ++ +GKG  ++ I+IN V
Sbjct: 183 QPHGTCNRVTGECECD-SQTNGKGCELSRIYINSV 216


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,009,927
Number of Sequences: 1657284
Number of extensions: 11658965
Number of successful extensions: 29583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29573
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)