Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F24
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   1.4  
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    26   3.3  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   5.8  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   7.6  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 366 AAPKIEYNRLLLHDDQSASLYPPSPP 443
           AA K+E N L L  D     +PP+PP
Sbjct: 209 AAEKVEDNTLTLFSDVERYSHPPTPP 234


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 189 SVTDVIGECSCGRTKLS 139
           S+T+V GE  CG+T++S
Sbjct: 114 SITEVFGEFRCGKTQMS 130


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = +1

Query: 325 SLTPKMICLKRSRALH-----RRSNTIDYCCTTTSQLACTHHHRPRSSRTVLISLTIFC 486
           S T    C K+S  LH      ++N +    +T S    T  H P +S   LIS T  C
Sbjct: 49  STTSWRACRKKSAPLHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYASDGTLISATNHC 107


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/29 (27%), Positives = 22/29 (75%)
 Frame = +3

Query: 276 SGLLTDEQCLELLDLDIFNTEDDLLKTFP 362
           +G + +++  +L+D++  N +DD++++FP
Sbjct: 181 NGDVKEKKNADLMDIESENKKDDIVESFP 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,902
Number of Sequences: 5004
Number of extensions: 47255
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)